ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100797366	probable glutamate carboxypeptidase LAMP1
gma-r.7	100797366	probable glutamate carboxypeptidase LAMP1
gma-m.5	100797366	probable glutamate carboxypeptidase LAMP1
gma-u.5	121175242	probable glutamate carboxypeptidase LAMP1
mtr-u.5	25496988	probable glutamate carboxypeptidase LAMP1
ppo-u.5	7497629	probable glutamate carboxypeptidase LAMP1
ath-u.5	AT5G19740	Peptidase M28 family protein
bra-r.6	103846201	probable glutamate carboxypeptidase LAMP1
vvi-u.5	100247495	probable glutamate carboxypeptidase LAMP1
ghi-r.1	107901163	probable glutamate carboxypeptidase LAMP1
ghi-r.1	107962711	probable glutamate carboxypeptidase LAMP1
bna-r.1	106380741	probable glutamate carboxypeptidase LAMP1
bna-r.1	106439461	probable glutamate carboxypeptidase LAMP1
bna-r.1	106378991	probable glutamate carboxypeptidase LAMP1
cit-r.1	102631235	probable glutamate carboxypeptidase LAMP1
sly-u.5	101265621	uncharacterized LOC101265621
sot-r.1	102606327	probable glutamate carboxypeptidase 2
nta-r.1	107776458	putative glutamate carboxypeptidase LAMP1
nta-r.1	107776443	putative glutamate carboxypeptidase LAMP1
osa-u.5	4327207	probable glutamate carboxypeptidase LAMP1
osa-u.5	4327208	probable glutamate carboxypeptidase LAMP1
osa-u.5	4326550	probable glutamate carboxypeptidase LAMP1
zma-u.5	100280279	uncharacterized LOC100280279
zma-u.5	100280900	glutamate carboxypeptidase 2
zma-u.5	100280068	uncharacterized LOC100280068
tae-r.2	123079069	probable glutamate carboxypeptidase LAMP1
tae-r.2	123061944	probable glutamate carboxypeptidase LAMP1
tae-r.2	123061959	probable glutamate carboxypeptidase LAMP1
hvu-r.1	123444380	probable glutamate carboxypeptidase LAMP1
hvu-r.1	123444369	probable glutamate carboxypeptidase LAMP1
hvu-r.1	123444368	probable glutamate carboxypeptidase LAMP1
sbi-r.1	8062167	probable glutamate carboxypeptidase LAMP1
sbi-r.1	8075557	probable glutamate carboxypeptidase LAMP1
bdi-r.1	100825924	probable glutamate carboxypeptidase LAMP1
bdi-r.1	100822748	probable glutamate carboxypeptidase LAMP1
bdi-r.1	100823266	probable glutamate carboxypeptidase LAMP1

Top 50 coexpressed genes to 100797366 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100797366 (gma-u.5 coexpression data)

CoexMap"100797366"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0004180 [list] [network] carboxypeptidase activity

(89 genes)

IEA

Protein

XP_006572934.1 [sequence] [blastp]
XP_006572935.1 [sequence] [blastp]
XP_014620079.1 [sequence] [blastp]
XP_040874198.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, vacu 1, cyto 1, extr 1, E.R. 1, pero 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_006572934.1)
chlo 6, vacu 1, cyto 1, extr 1, E.R. 1, pero 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_006572935.1)
chlo 7, vacu 1, extr 1, E.R. 1	(predict for XP_014620079.1)
chlo 7, vacu 1, extr 1, E.R. 1	(predict for XP_040874198.1)

Subcellular
localization
TargetP

other 3	(predict for XP_006572934.1)
other 3	(predict for XP_006572935.1)
other 3	(predict for XP_014620079.1)
other 3	(predict for XP_040874198.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100797366	gma-r.7 for 100797366	gma-m.5 for 100797366	gma-u.5 for 121175242	mtr-u.5 for 25496988	ppo-u.5 for 7497629	ath-u.5 for AT5G19740	bra-r.6 for 103846201	vvi-u.5 for 100247495	ghi-r.1 for 107901163	ghi-r.1 for 107962711	bna-r.1 for 106380741	bna-r.1 for 106439461	bna-r.1 for 106378991	cit-r.1 for 102631235	sly-u.5 for 101265621	sot-r.1 for 102606327	nta-r.1 for 107776458	nta-r.1 for 107776443	osa-u.5 for 4327207	osa-u.5 for 4327208	osa-u.5 for 4326550	zma-u.5 for 100280279	zma-u.5 for 100280900	zma-u.5 for 100280068	tae-r.2 for 123079069	tae-r.2 for 123061944	tae-r.2 for 123061959	hvu-r.1 for 123444380	hvu-r.1 for 123444369	hvu-r.1 for 123444368	sbi-r.1 for 8062167	sbi-r.1 for 8075557	bdi-r.1 for 100825924	bdi-r.1 for 100822748	bdi-r.1 for 100823266

Ortholog

Ortholog ID: 4586

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

probable glutamate carboxypeptidase LAMP1

Peptidase M28 family protein

probable glutamate carboxypeptidase LAMP1

uncharacterized LOC101265621

probable glutamate carboxypeptidase 2

putative glutamate carboxypeptidase LAMP1

probable glutamate carboxypeptidase LAMP1

uncharacterized LOC100280279

glutamate carboxypeptidase 2

uncharacterized LOC100280068

probable glutamate carboxypeptidase LAMP1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	4
gma01200	Carbon metabolism	4
gma00010	Glycolysis / Gluconeogenesis	3
gma00562	Inositol phosphate metabolism	3
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	2
gma00500	Starch and sucrose metabolism	2
gma00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi01200	Carbon metabolism	2
vvi04016	MAPK signaling pathway - plant	2
vvi04146	Peroxisome	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	5
bna04075	Plant hormone signal transduction	5
bna00220	Arginine biosynthesis	2
bna00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	6
bna04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	10
bna04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	3
nta01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00230	Purine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	4
zma04626	Plant-pathogen interaction	4
zma04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	8
zma00270	Cysteine and methionine metabolism	5
zma01200	Carbon metabolism	4
zma00450	Selenocompound metabolism	3
zma00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	3
zma04145	Phagosome	3
zma00564	Glycerophospholipid metabolism	2
zma04070	Phosphatidylinositol signaling system	2
zma00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3
tae00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	4
bdi04120	Ubiquitin mediated proteolysis	2
bdi00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00592	alpha-Linolenic acid metabolism	2
bdi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	3

Expression

Expression pattern

Entrez Gene ID^*

100797366

121175242

25496988

7497629

832094

103846201

100247495

107901163

107962711

106380741

106439461

106378991

102631235

101265621

102606327

107776458

107776443

4327207

4327208

4326550

100280279

100280900

100280068

123079069

123079053

123079055

123444380

123444369

123444368

8062167

8075557

100825924

100822748

100823266

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	1	1	1	1	2	3	1	1	1	2	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100797366 (gma-u.5 coexpression data)

Top 50 enrichment test to 100797366 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**