ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100799018	WD-40 repeat-containing protein MSI3
gma-r.7	100799018	WD-40 repeat-containing protein MSI3
gma-u.5	100796217	WD-40 repeat-containing protein MSI1
gma-u.5	100127416	MSI1
gma-u.5	100791834	WD-40 repeat-containing protein MSI2-like
mtr-u.5	11407768	WD-40 repeat-containing protein MSI1
mtr-u.5	11440234	WD-40 repeat-containing protein MSI3
ppo-u.5	7481463	WD-40 repeat-containing protein MSI1
ppo-u.5	7470405	WD-40 repeat-containing protein MSI3
ppo-u.5	7469389	WD-40 repeat-containing protein MSI1
ath-u.5	MSI3	Transducin family protein / WD-40 repeat family protein
ath-u.5	MSI2	Transducin family protein / WD-40 repeat family protein
ath-u.5	MSI1	Transducin/WD40 repeat-like superfamily protein
bra-r.6	103837783	WD-40 repeat-containing protein MSI2
bra-r.6	103856707	histone-binding protein MSI1
bra-r.6	103845251	histone-binding protein MSI1
vvi-u.5	100247592	WD-40 repeat-containing protein MSI1
vvi-u.5	100265787	WD-40 repeat-containing protein MSI3
ghi-r.1	107936990	WD-40 repeat-containing protein MSI3
ghi-r.1	107933309	WD-40 repeat-containing protein MSI1
ghi-r.1	107928902	WD-40 repeat-containing protein MSI3
bna-r.1	125576673	WD-40 repeat-containing protein MSI2
bna-r.1	106435642	histone-binding protein MSI1
bna-r.1	106426050	histone-binding protein MSI1
cit-r.1	102608815	WD-40 repeat-containing protein MSI1
cit-r.1	102628661	WD-40 repeat-containing protein MSI3
sly-u.5	101266569	WD-40 repeat-containing protein MSI2
sly-u.5	MSI1	WD-40 repeat-containing protein MSI1
sot-r.1	102599978	WD-40 repeat-containing protein MSI2-like
sot-r.1	102593580	WD-40 repeat-containing protein MSI1
nta-r.1	107828333	histone-binding protein MSI1
nta-r.1	107765912	WD-40 repeat-containing protein MSI2
nta-r.1	107804023	histone-binding protein MSI1
osa-u.5	4347727	WD-40 repeat-containing protein MSI3
osa-u.5	4333540	histone-binding protein MSI1 homolog
zma-u.5	542084	nucleosome/chromatin assembly factor 104
zma-u.5	103643702	histone-binding protein MSI1 homolog
zma-u.5	118476057	uncharacterized LOC118476057
tae-r.2	123113217	histone-binding protein MSI1 homolog
tae-r.2	123112892	histone-binding protein MSI1
tae-r.2	123104623	histone-binding protein MSI1
hvu-r.1	123452123	histone-binding protein MSI1 homolog
hvu-r.1	123400180	histone-binding protein MSI1 homolog
sbi-r.1	8062219	histone-binding protein MSI1 homolog
sbi-r.1	8067288	histone-binding protein MSI1 homolog
bdi-r.1	100842169	histone-binding protein MSI1
bdi-r.1	100837145	histone-binding protein MSI1 homolog
cre-r.1	CHLRE_12g523200v5	uncharacterized protein

Top 50 coexpressed genes to 100799018 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100799018 (gma-u.5 coexpression data)

CoexMap"100799018"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx03082 [list] [network] ATP-dependent chromatin remodeling (120 genes)

gmx03083 [list] [network] Polycomb repressive complex (94 genes)

GO BP

GO:0006338 [list] [network] chromatin remodeling	(245 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(3122 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0031491 [list] [network] nucleosome binding	(56 genes)	IEA
GO:0042393 [list] [network] histone binding	(111 genes)	IEA

Protein

XP_003537716.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 1, pero 1, cyto 1, extr 1, vacu 1, chlo_mito 1

(predict for XP_003537716.1)

Subcellular
localization
TargetP

other 9

(predict for XP_003537716.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100799018	gma-r.7 for 100799018	gma-u.5 for 100796217	gma-u.5 for 100127416	gma-u.5 for 100791834	mtr-u.5 for 11407768	mtr-u.5 for 11440234	ppo-u.5 for 7481463	ppo-u.5 for 7470405	ppo-u.5 for 7469389	ath-u.5 for MSI3	ath-u.5 for MSI2	ath-u.5 for MSI1	bra-r.6 for 103837783	bra-r.6 for 103856707	bra-r.6 for 103845251	vvi-u.5 for 100247592	vvi-u.5 for 100265787	ghi-r.1 for 107936990	ghi-r.1 for 107933309	ghi-r.1 for 107928902	bna-r.1 for 125576673	bna-r.1 for 106435642	bna-r.1 for 106426050	cit-r.1 for 102608815	cit-r.1 for 102628661	sly-u.5 for 101266569	sly-u.5 for MSI1	sot-r.1 for 102599978	sot-r.1 for 102593580	nta-r.1 for 107828333	nta-r.1 for 107765912	nta-r.1 for 107804023	osa-u.5 for 4347727	osa-u.5 for 4333540	zma-u.5 for 542084	zma-u.5 for 103643702	zma-u.5 for 118476057	tae-r.2 for 123113217	tae-r.2 for 123112892	tae-r.2 for 123104623	hvu-r.1 for 123452123	hvu-r.1 for 123400180	sbi-r.1 for 8062219	sbi-r.1 for 8067288	bdi-r.1 for 100842169	bdi-r.1 for 100837145	cre-r.1 for CHLRE_12g523200v5

Ortholog

Ortholog ID: 2199

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

MSI3

MSI2

MSI1

MSI1

Function^*

WD-40 repeat-containing protein MSI3

WD-40 repeat-containing protein MSI1

WD-40 repeat-containing protein MSI2-like

WD-40 repeat-containing protein MSI1

WD-40 repeat-containing protein MSI3

WD-40 repeat-containing protein MSI1

WD-40 repeat-containing protein MSI2

Transducin family protein / WD-40 repeat family protein

Transducin/WD40 repeat-like superfamily protein

WD-40 repeat-containing protein MSI2

histone-binding protein MSI1

WD-40 repeat-containing protein MSI2

WD-40 repeat-containing protein MSI1

WD-40 repeat-containing protein MSI3

WD-40 repeat-containing protein MSI1

WD-40 repeat-containing protein MSI3

WD-40 repeat-containing protein MSI1

histone-binding protein MSI1-like

WD-40 repeat-containing protein MSI2

histone-binding protein MSI1

WD-40 repeat-containing protein MSI1

WD-40 repeat-containing protein MSI3

WD-40 repeat-containing protein MSI2

WD-40 repeat-containing protein MSI1

WD-40 repeat-containing protein MSI2-like

WD-40 repeat-containing protein MSI1

histone-binding protein MSI1

WD-40 repeat-containing protein MSI2

WD-40 repeat-containing protein MSI3

histone-binding protein MSI1 homolog

uncharacterized LOC118476057

histone-binding protein MSI1 homolog

histone-binding protein MSI1

histone-binding protein MSI1 homolog

histone-binding protein MSI1

histone-binding protein MSI1 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2
gma03083	Polycomb repressive complex	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03082	ATP-dependent chromatin remodeling	2
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3
gma03082	ATP-dependent chromatin remodeling	3
gma03083	Polycomb repressive complex	3
gma03030	DNA replication	2
gma03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3
mtr03010	Ribosome	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	2
ppo03410	Base excision repair	2
ppo03420	Nucleotide excision repair	2
ppo03430	Mismatch repair	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo04141	Protein processing in endoplasmic reticulum	3
ppo03083	Polycomb repressive complex	3
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00230	Purine metabolism	2
ppo00240	Pyrimidine metabolism	2
ppo00480	Glutathione metabolism	2
ppo01232	Nucleotide metabolism	2
ppo04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2
ath03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	9
ath03082	ATP-dependent chromatin remodeling	4
ath03420	Nucleotide excision repair	3
ath03430	Mismatch repair	3
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	3
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	6
bra03440	Homologous recombination	2
bra03460	Fanconi anemia pathway	2
bra03082	ATP-dependent chromatin remodeling	2
bra03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	2
bra04141	Protein processing in endoplasmic reticulum	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03030	DNA replication	2
bra03440	Homologous recombination	2
bra03082	ATP-dependent chromatin remodeling	2
bra03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	4
vvi03018	RNA degradation	4
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2
ghi03030	DNA replication	2
ghi03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04148	Efferocytosis	2
ghi03040	Spliceosome	2
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03030	DNA replication	2
ghi03410	Base excision repair	2
ghi03420	Nucleotide excision repair	2
ghi03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6
bna03083	Polycomb repressive complex	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	4
bna03083	Polycomb repressive complex	4
bna04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6
bna03083	Polycomb repressive complex	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3
cit03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03030	DNA replication	12
sly03420	Nucleotide excision repair	2
sly03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00230	Purine metabolism	2
sot00240	Pyrimidine metabolism	2
sot00480	Glutathione metabolism	2
sot01232	Nucleotide metabolism	2
sot00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4
nta03082	ATP-dependent chromatin remodeling	2
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	4
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta03082	ATP-dependent chromatin remodeling	2
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2
nta03030	DNA replication	2
nta03410	Base excision repair	2
nta03420	Nucleotide excision repair	2
nta03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	7
osa00240	Pyrimidine metabolism	3
osa01232	Nucleotide metabolism	3
osa00230	Purine metabolism	2
osa00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	4
osa03040	Spliceosome	4
osa03015	mRNA surveillance pathway	3
osa03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2
zma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00010	Glycolysis / Gluconeogenesis	2
zma03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	6
tae03083	Polycomb repressive complex	6
tae04120	Ubiquitin mediated proteolysis	3
tae03030	DNA replication	2
tae03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	10
tae03410	Base excision repair	4
tae03018	RNA degradation	3
tae03420	Nucleotide excision repair	3
tae03430	Mismatch repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	5
tae03083	Polycomb repressive complex	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	3
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu00300	Lysine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi03040	Spliceosome	2
sbi00010	Glycolysis / Gluconeogenesis	2
sbi00620	Pyruvate metabolism	2
sbi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00240	Pyrimidine metabolism	3
sbi01232	Nucleotide metabolism	3
sbi03030	DNA replication	2
sbi00230	Purine metabolism	2
sbi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2
bdi00240	Pyrimidine metabolism	2
bdi00480	Glutathione metabolism	2
bdi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	4
cre03040	Spliceosome	3
cre03082	ATP-dependent chromatin remodeling	2
cre03083	Polycomb repressive complex	2

Expression

Expression pattern

Entrez Gene ID^*

100799018

100796217

100791834

11407768

11440234

7470405

7469389

7494244

829657

816179

835935

103837783

103856707

103846012

100247592

100265787

107933309

107928902

107920532

106420262

106347047

106388250

102608815

102628661

101266569

543534

102599978

102593580

107828333

107804023

107828303

4347727

4333540

103643702

118476057

103628047

123113217

123104623

123122733

123452123

123400180

8062219

8067288

100842169

100837145

5722539

The preparation time of this page was 0.2 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	2	3	3	3	2	3	3	2	2	2	3	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100799018 (gma-u.5 coexpression data)

Top 50 enrichment test to 100799018 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**