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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100812307   pentatricopeptide repeat-containing protein At3g06920 
 gma-r.7   100812307   pentatricopeptide repeat-containing protein At3g06920 
 mtr-u.5   11437374   pentatricopeptide repeat-containing protein At3g06920 
 ppo-u.5   7475916   pentatricopeptide repeat-containing protein At3g06920 
 ath-u.5   AT3G06920   Tetratricopeptide repeat (TPR)-like superfamily protein 
 bra-r.6   103859190   pentatricopeptide repeat-containing protein At3g06920 
 vvi-u.5   100249392   pentatricopeptide repeat-containing protein At3g06920 
 ghi-r.1   107935101   pentatricopeptide repeat-containing protein At3g06920 
 ghi-r.1   107931379   pentatricopeptide repeat-containing protein At3g06920 
 bna-r.1   106388926   pentatricopeptide repeat-containing protein At3g06920 
 cit-r.1   102616245   pentatricopeptide repeat-containing protein At3g06920 
 sly-u.5   101248045   pentatricopeptide repeat-containing protein At3g06920 
 sot-r.1   102587317   pentatricopeptide repeat-containing protein At3g06920 
 nta-r.1   107806548   uncharacterized LOC107806548 
 nta-r.1   107788065   uncharacterized LOC107788065 
 osa-u.5   4342835   pentatricopeptide repeat-containing protein At3g06920 
 zma-u.5   103633782   pentatricopeptide repeat-containing protein At3g06920 
 tae-r.2   123078081   pentatricopeptide repeat-containing protein At3g06920 
 tae-r.2   123069594   pentatricopeptide repeat-containing protein At3g06920 
 tae-r.2   123060995   pentatricopeptide repeat-containing protein At3g06920 
 hvu-r.1   123443426   pentatricopeptide repeat-containing protein At3g06920 
 sbi-r.1   8054416   pentatricopeptide repeat-containing protein At3g06920 
 bdi-r.1   100841364   pentatricopeptide repeat-containing protein At3g06920 

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Top 50 coexpressed genes to 100812307 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100812307 (gma-u.5 coexpression data)

CoexMap""


gmaLOC100812307 | Entrez gene ID : 100812307      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
Function pentatricopeptide repeat-containing protein At3g06920
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003518545.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 1,  nucl 1,  cyto_mito 1  (predict for XP_003518545.1)
Subcellular
localization
TargetP
mito 4,  chlo 3  (predict for XP_003518545.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100812307
gma-r.7
for
100812307
mtr-u.5
for
11437374
ppo-u.5
for
7475916
ath-u.5
for
AT3G06920
bra-r.6
for
103859190
vvi-u.5
for
100249392
ghi-r.1
for
107935101
ghi-r.1
for
107931379
bna-r.1
for
106388926
cit-r.1
for
102616245
sly-u.5
for
101248045
sot-r.1
for
102587317
nta-r.1
for
107806548
nta-r.1
for
107788065
osa-u.5
for
4342835
zma-u.5
for
103633782
tae-r.2
for
123078081
tae-r.2
for
123069594
tae-r.2
for
123060995
hvu-r.1
for
123443426
sbi-r.1
for
8054416
bdi-r.1
for
100841364

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Ortholog ID: 11288
Species gma mtr ppo ath bra vvi ghi ghi bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC100812307 LOC11437374 LOC7475916 AT3G06920 LOC103859190 LOC100249392 LOC107935101 LOC107931379 LOC106388926 LOC102616245 LOC101248045 LOC102587317 LOC107806548 LOC107788065 LOC4342835 LOC103633782 LOC123078081 LOC123069594 LOC123060995 LOC123443426 LOC8054416 LOC100841364
Function* pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 uncharacterized LOC107806548 uncharacterized LOC107788065 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920 pentatricopeptide repeat-containing protein At3g06920
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03020 RNA polymerase 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100812307 11437374 7475916 819877 103859190 100249392 107935101 107931379 106388926 102616245 101248045 102587317 107806548 107788065 4342835 103633782 123078081 123069594 123060995 123443426 8054416 100841364
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