ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100812413	MADS-box transcription factor 23
gma-r.7	100812413	MADS-box transcription factor 23
gma-u.5	100808145	MADS-box transcription factor 23
mtr-u.5	11407839	agamous-like MADS-box protein AGL21
mtr-u.5	11423803	MADS-box transcription factor 23
mtr-u.5	11418839	MADS-box transcription factor 23
ath-u.5	AGL16	AGAMOUS-like 16
bra-r.6	103840485	agamous-like MADS-box protein AGL16
ghi-r.1	107941799	MADS-box transcription factor 23-like
ghi-r.1	107886991	MADS-box transcription factor ANR1
bna-r.1	111201498	agamous-like MADS-box protein AGL16
bna-r.1	125576686	MADS-box transcription factor ANR1
cit-r.1	102613302	MADS-box transcription factor 23-like
sot-r.1	102591829	MADS-box transcription factor 23
sot-r.1	102582884	MADS-box transcription factor 23-like
sot-r.1	102593715	MADS-box transcription factor 23-like
nta-r.1	107825118	MADS-box transcription factor 23-like
nta-r.1	107768695	MADS-box transcription factor 23
nta-r.1	107811079	MADS-box transcription factor 23-like
osa-u.5	107276913	MADS-box transcription factor 23-like
osa-u.5	4330621	MADS-box transcription factor 57-like
osa-u.5	4329771	MADS-box transcription factor 27-like
zma-u.5	541764	MADS2
zma-u.5	103646360	MADS-box transcription factor 27
tae-r.2	123045674	MADS-box transcription factor 27
sbi-r.1	8057478	MADS-box transcription factor 27
bdi-r.1	100840222	MADS-box transcription factor 57-like
bdi-r.1	100823221	MADS-box transcription factor 27

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(294 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(449 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(557 genes)	IEA
GO:0046983 [list] [network] protein dimerization activity	(899 genes)	IEA

Protein

XP_006596388.1 [sequence] [blastp]
XP_006596390.1 [sequence] [blastp]
XP_014622588.1 [sequence] [blastp]
XP_014622589.1 [sequence] [blastp]
XP_014622590.1 [sequence] [blastp]
XP_014622591.1 [sequence] [blastp]
XP_014622592.1 [sequence] [blastp]
XP_040864874.1 [sequence] [blastp]
XP_040864875.1 [sequence] [blastp]
XP_040864876.1 [sequence] [blastp]
XP_040864877.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, mito 1, plas 1, mito_plas 1	(predict for XP_006596388.1)
nucl 6, chlo 2, mito 1, plas 1, mito_plas 1	(predict for XP_006596390.1)
nucl 7, chlo 1, mito 1, plas 1, mito_plas 1	(predict for XP_014622588.1)
nucl 7, chlo 1, mito 1, plas 1, mito_plas 1	(predict for XP_014622589.1)
nucl 7, chlo 1, mito 1, plas 1, mito_plas 1	(predict for XP_014622590.1)
nucl 7, chlo 1, mito 1, plas 1, mito_plas 1	(predict for XP_014622591.1)
nucl 6, chlo 3, cyto_nucl 3, cysk_nucl 3	(predict for XP_014622592.1)
nucl 7, chlo 1, mito 1, plas 1, mito_plas 1	(predict for XP_040864874.1)
nucl 7, chlo 1, mito 1, plas 1, mito_plas 1	(predict for XP_040864875.1)
nucl 6, chlo 3, cyto_nucl 3, cysk_nucl 3	(predict for XP_040864876.1)
nucl 6, chlo 2, mito 1, plas 1, mito_plas 1	(predict for XP_040864877.1)

Subcellular
localization
TargetP

other 7, mito 5	(predict for XP_006596388.1)
other 7, mito 5	(predict for XP_006596390.1)
other 7, mito 5	(predict for XP_014622588.1)
other 7, mito 5	(predict for XP_014622589.1)
other 7, mito 5	(predict for XP_014622590.1)
other 7, mito 5	(predict for XP_014622591.1)
other 7, mito 5	(predict for XP_014622592.1)
other 7, mito 5	(predict for XP_040864874.1)
other 7, mito 5	(predict for XP_040864875.1)
other 7, mito 5	(predict for XP_040864876.1)
other 7, mito 5	(predict for XP_040864877.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100812413	gma-r.7 for 100812413	gma-u.5 for 100808145	mtr-u.5 for 11407839	mtr-u.5 for 11423803	mtr-u.5 for 11418839	ath-u.5 for AGL16	bra-r.6 for 103840485	ghi-r.1 for 107941799	ghi-r.1 for 107886991	bna-r.1 for 111201498	bna-r.1 for 125576686	cit-r.1 for 102613302	sot-r.1 for 102591829	sot-r.1 for 102582884	sot-r.1 for 102593715	nta-r.1 for 107825118	nta-r.1 for 107768695	nta-r.1 for 107811079	osa-u.5 for 107276913	osa-u.5 for 4330621	osa-u.5 for 4329771	zma-u.5 for 541764	zma-u.5 for 103646360	tae-r.2 for 123045674	sbi-r.1 for 8057478	bdi-r.1 for 100840222	bdi-r.1 for 100823221

Ortholog

Ortholog ID: 554

Species

gma

mtr

ppo

ath

bra

ghi

bna

cit

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

AGL16

Function^*