ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100820110	ELF3-like protein 2
gma-r.7	100820110	ELF3-like protein 2
gma-u.5	102663657	ELF3-like protein 2
gma-u.5	ELF3B	protein EARLY FLOWERING 3b
gma-u.5	100788038	protein EARLY FLOWERING 3
mtr-u.5	25500383	protein HEADING DATE 3B
mtr-u.5	11431402	protein EARLY FLOWERING 3
mtr-u.5	25482012	ELF3-like protein 2
ppo-u.5	7470724	protein EARLY FLOWERING 3
ppo-u.5	7478180	protein HEADING DATE 3B
ath-u.5	ELF3	hydroxyproline-rich glycoprotein family protein
bra-r.6	103249168	protein EARLY FLOWERING 3
bra-r.6	103864705	protein EARLY FLOWERING 3
vvi-u.5	100256592	protein EARLY FLOWERING 3
vvi-u.5	100255961	protein EARLY FLOWERING 3
ghi-r.1	107929930	protein EARLY FLOWERING 3
ghi-r.1	107889101	protein HEADING DATE 3B
bna-r.1	106401206	protein EARLY FLOWERING 3
bna-r.1	106401205	protein EARLY FLOWERING 3-like
bna-r.1	106368547	protein EARLY FLOWERING 3
cit-r.1	102615318	protein EARLY FLOWERING 3
cit-r.1	102622101	ELF3-like protein 2
sly-u.5	101268174	protein EARLY FLOWERING 3
sly-u.5	101267430	protein EARLY FLOWERING 3
sly-u.5	101265040	ELF3-like protein 2
sot-r.1	102601288	protein EARLY FLOWERING 3-like
sot-r.1	102586641	protein EARLY FLOWERING 3-like
sot-r.1	102581245	protein EARLY FLOWERING 3-like
nta-r.1	107830690	protein EARLY FLOWERING 3
nta-r.1	107766207	ELF3-like protein 2
nta-r.1	107785468	ELF3-like protein 2
osa-u.5	4340087	protein HEADING DATE 3B-like
osa-u.5	4327931	ELF3-like protein 2
zma-u.5	103630791	ELF3-like protein 2
zma-u.5	100383534	uncharacterized LOC100383534
tae-r.2	123071043	ELF3-like protein 2
tae-r.2	123183422	ELF3-like protein 2
tae-r.2	100127071	ELF3-like protein 2
hvu-r.1	123452745	ELF3-like protein 2
sbi-r.1	8065332	ELF3-like protein 2
sbi-r.1	8078190	ELF3-like protein 2
bdi-r.1	100838991	ELF3-like protein 2

Top 50 coexpressed genes to 100820110 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100820110 (gma-u.5 coexpression data)

CoexMap"100820110"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx04712 [list] [network] Circadian rhythm - plant (105 genes)

GO BP

GO:2000028 [list] [network] regulation of photoperiodism, flowering

(16 genes)

IEA

GO CC

GO MF

Protein

XP_006585544.1 [sequence] [blastp]
XP_006585546.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto_nucl 4, vacu 1, pero 1, cysk 1, golg_plas 1	(predict for XP_006585544.1)
nucl 6, cyto_nucl 4, vacu 1, pero 1, cysk 1, golg_plas 1	(predict for XP_006585546.1)

Subcellular
localization
TargetP

other 8	(predict for XP_006585544.1)
other 8	(predict for XP_006585546.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100820110	gma-r.7 for 100820110	gma-u.5 for 102663657	gma-u.5 for ELF3B	gma-u.5 for 100788038	mtr-u.5 for 25500383	mtr-u.5 for 11431402	mtr-u.5 for 25482012	ppo-u.5 for 7470724	ppo-u.5 for 7478180	ath-u.5 for ELF3	bra-r.6 for 103249168	bra-r.6 for 103864705	vvi-u.5 for 100256592	vvi-u.5 for 100255961	ghi-r.1 for 107929930	ghi-r.1 for 107889101	bna-r.1 for 106401206	bna-r.1 for 106401205	bna-r.1 for 106368547	cit-r.1 for 102615318	cit-r.1 for 102622101	sly-u.5 for 101268174	sly-u.5 for 101267430	sly-u.5 for 101265040	sot-r.1 for 102601288	sot-r.1 for 102586641	sot-r.1 for 102581245	nta-r.1 for 107830690	nta-r.1 for 107766207	nta-r.1 for 107785468	osa-u.5 for 4340087	osa-u.5 for 4327931	zma-u.5 for 103630791	zma-u.5 for 100383534	tae-r.2 for 123071043	tae-r.2 for 123183422	tae-r.2 for 100127071	hvu-r.1 for 123452745	sbi-r.1 for 8065332	sbi-r.1 for 8078190	bdi-r.1 for 100838991

Ortholog

Ortholog ID: 2617

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

ELF3B

ELF3

Function^*

ELF3-like protein 2

protein EARLY FLOWERING 3b

protein EARLY FLOWERING 3

protein HEADING DATE 3B

protein EARLY FLOWERING 3

ELF3-like protein 2

protein EARLY FLOWERING 3

protein HEADING DATE 3B

hydroxyproline-rich glycoprotein family protein

protein EARLY FLOWERING 3

protein HEADING DATE 3B

protein EARLY FLOWERING 3-like

protein EARLY FLOWERING 3

ELF3-like protein 2

protein EARLY FLOWERING 3

ELF3-like protein 2

protein EARLY FLOWERING 3-like

protein EARLY FLOWERING 3

ELF3-like protein 2

protein HEADING DATE 3B

protein HEADING DATE 3B-like

ELF3-like protein 2

uncharacterized LOC100383534

ELF3-like protein 2

Coexmap

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Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	2
gma00710	Carbon fixation by Calvin cycle	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	6
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	2
ghi04016	MAPK signaling pathway - plant	2
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	6
cit04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00564	Glycerophospholipid metabolism	2
sot04075	Plant hormone signal transduction	2
sot00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2
nta03010	Ribosome	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2
nta00480	Glutathione metabolism	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	8
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	8
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04712	Circadian rhythm - plant	4

Expression

Expression pattern

Entrez Gene ID^*

100820110

100818279

100788038

25500383

11431402

25482012

7470724

7478180

817134

103249168

103864705

100256592

100255961

107929929

107891717

106401205

106368547

106413679

102615318

102622101

101268174

101265040

101245619

102601288

102586641

102597046

107832158

107789414

107811695

4340087

4327931

103630791

100383534

123071043

123183422

100127071

123452745

8065332

8078190

100838991

The preparation time of this page was 0.1 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	2	1	2	2	2	3	2	3	3	3	2	2	3	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100820110 (gma-u.5 coexpression data)

Top 50 enrichment test to 100820110 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**