ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	778089	protein REVEILLE 7
gma-r.7	778089	protein REVEILLE 7
gma-m.5	778089	protein REVEILLE 7
gma-u.5	780539	protein REVEILLE 1
gma-u.5	MYB177	MYB transcription factor MYB177
gma-u.5	MYB173	MYB transcription factor MYB173
mtr-u.5	11427268	protein REVEILLE 1
mtr-u.5	25497345	protein REVEILLE 7
ppo-u.5	18106485	protein REVEILLE 1
ppo-u.5	18105607	protein REVEILLE 7
ppo-u.5	7494524	protein REVEILLE 1
ath-u.5	EPR1	Homeodomain-like superfamily protein
ath-u.5	RVE2	Homeodomain-like superfamily protein
ath-u.5	RVE1	Homeodomain-like superfamily protein
bra-r.6	103856239	protein REVEILLE 1
bra-r.6	103846255	protein REVEILLE 1
bra-r.6	103851098	protein REVEILLE 1
vvi-u.5	100263252	protein REVEILLE 1
ghi-r.1	107904753	protein REVEILLE 7
ghi-r.1	107926642	protein REVEILLE 2
ghi-r.1	107953319	protein REVEILLE 7
bna-r.1	111202817	protein REVEILLE 1-like
bna-r.1	111211014	protein REVEILLE 1
bna-r.1	111214517	protein REVEILLE 7-like
cit-r.1	102630458	protein REVEILLE 1
cit-r.1	102614255	protein REVEILLE 7-like
sly-u.5	101261079	protein REVEILLE 1
sly-u.5	101255972	protein REVEILLE 7
sot-r.1	102602066	protein REVEILLE 1
nta-r.1	107774404	protein REVEILLE 1
nta-r.1	107806142	uncharacterized LOC107806142
nta-r.1	107801057	protein REVEILLE 1-like
osa-u.5	4342135	protein REVEILLE 1
osa-u.5	4330349	protein REVEILLE 1
osa-u.5	4336779	uncharacterized LOC4336779
zma-u.5	100280442	uncharacterized LOC100280442
zma-u.5	100276850	uncharacterized LOC100276850
zma-u.5	100273616	uncharacterized LOC100273616
tae-r.2	123159960	protein LHY
tae-r.2	123046701	protein REVEILLE 7
tae-r.2	123054556	protein REVEILLE 7
hvu-r.1	123427840	protein REVEILLE 1-like
hvu-r.1	123407640	protein LHY-like
hvu-r.1	123401551	protein REVEILLE 1-like
sbi-r.1	110431210	uncharacterized LOC110431210
sbi-r.1	8073204	uncharacterized LOC8073204
sbi-r.1	8060442	uncharacterized LOC8060442
bdi-r.1	100829508	myb-like protein H
bdi-r.1	100837761	protein REVEILLE 2
bdi-r.1	100842816	protein REVEILLE 7-like
cre-r.1	CHLRE_06g275350v5	uncharacterized protein

Top 50 coexpressed genes to 778089 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 778089 (gma-u.5 coexpression data)

CoexMap"778089"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(3517 genes)

IEA

Protein

XP_003548314.1 [sequence] [blastp]
XP_014624432.1 [sequence] [blastp]
XP_040866603.1 [sequence] [blastp]
XP_040866604.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_003548314.1)
nucl 10	(predict for XP_014624432.1)
nucl 10	(predict for XP_040866603.1)
nucl 10	(predict for XP_040866604.1)

Subcellular
localization
TargetP

other 8	(predict for XP_003548314.1)
other 8	(predict for XP_014624432.1)
other 8	(predict for XP_040866603.1)
other 8	(predict for XP_040866604.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 778089	gma-r.7 for 778089	gma-m.5 for 778089	gma-u.5 for 780539	gma-u.5 for MYB177	gma-u.5 for MYB173	mtr-u.5 for 11427268	mtr-u.5 for 25497345	ppo-u.5 for 18106485	ppo-u.5 for 18105607	ppo-u.5 for 7494524	ath-u.5 for EPR1	ath-u.5 for RVE2	ath-u.5 for RVE1	bra-r.6 for 103856239	bra-r.6 for 103846255	bra-r.6 for 103851098	vvi-u.5 for 100263252	ghi-r.1 for 107904753	ghi-r.1 for 107926642	ghi-r.1 for 107953319	bna-r.1 for 111202817	bna-r.1 for 111211014	bna-r.1 for 111214517	cit-r.1 for 102630458	cit-r.1 for 102614255	sly-u.5 for 101261079	sly-u.5 for 101255972	sot-r.1 for 102602066	nta-r.1 for 107774404	nta-r.1 for 107806142	nta-r.1 for 107801057	osa-u.5 for 4342135	osa-u.5 for 4330349	osa-u.5 for 4336779	zma-u.5 for 100280442	zma-u.5 for 100276850	zma-u.5 for 100273616	tae-r.2 for 123159960	tae-r.2 for 123046701	tae-r.2 for 123054556	hvu-r.1 for 123427840	hvu-r.1 for 123407640	hvu-r.1 for 123401551	sbi-r.1 for 110431210	sbi-r.1 for 8073204	sbi-r.1 for 8060442	bdi-r.1 for 100829508	bdi-r.1 for 100837761	bdi-r.1 for 100842816	cre-r.1 for CHLRE_06g275350v5

Ortholog

Ortholog ID: 1576

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC778089

MYB177

MYB173

EPR1

RVE2

RVE1

EPR1

Function^*

protein REVEILLE 7

MYB transcription factor MYB177

MYB transcription factor MYB173

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 1

protein REVEILLE 7

Homeodomain-like superfamily protein

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 1

protein REVEILLE 2

protein REVEILLE 7

protein REVEILLE 1-like

protein REVEILLE 1

protein REVEILLE 7-like

protein REVEILLE 1

protein REVEILLE 7

protein REVEILLE 1

uncharacterized LOC107796078

protein REVEILLE 1

uncharacterized LOC107812899

protein REVEILLE 1

uncharacterized LOC4336779

uncharacterized LOC100276850

uncharacterized LOC100273483

uncharacterized LOC100279070

protein REVEILLE 7

protein REVEILLE 2

protein REVEILLE 1

protein REVEILLE 1-like

protein LHY-like

protein REVEILLE 1-like

uncharacterized LOC110431210

uncharacterized LOC8073204

uncharacterized LOC8060442

myb-like protein H

protein REVEILLE 2

protein REVEILLE 7-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3
mtr00270	Cysteine and methionine metabolism	2
mtr00330	Arginine and proline metabolism	2
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	4
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

778089

778060

778058

11427268

25497345

18106485

18105607

7485192

838413

833700

831595

103846255

103851098

103872597

100263252

107926642

107953319

121211262

111202817

111211014

106387719

102630458

102614255

101261079

101255972

102602066

107796078

107784585

107812899

4342135

4330349

4336779

100276850

100273483

100279070

123046701

123190414

100873110

123427840

123407640

123401551

110431210

8073204

8060442

100829508

100837761

100842816

5721757

The preparation time of this page was 0.4 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	2	3	3	3	1	3	3	2	2	1	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 778089 (gma-u.5 coexpression data)

Top 50 enrichment test to 778089 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**