ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-m.8	4327494	uncharacterized LOC4327494
osa-u.5	4327494	uncharacterized LOC4327494
osa-r.6	4327494	uncharacterized LOC4327494
osa-e.1	4327494	uncharacterized LOC4327494
osa-u.5	4339132	uncharacterized LOC4339132
tae-r.2	123060282	uncharacterized LOC123060282
tae-r.2	123071201	uncharacterized LOC123071201
tae-r.2	123079557	uncharacterized LOC123079557
hvu-r.1	123444500	uncharacterized LOC123444500
hvu-r.1	123444705	uncharacterized LOC123444705
bdi-r.1	100844569	uncharacterized LOC100844569
zma-u.5	100274410	Transducin/WD40 repeat-like superfamily protein
zma-u.5	100277503	uncharacterized LOC100277503
sbi-r.1	8077017	uncharacterized LOC8077017
ath-u.5	AT2G38630	Transducin/WD40 repeat-like superfamily protein
ath-u.5	AT3G54190	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100819305	uncharacterized LOC100819305
gma-u.5	100819178	uncharacterized LOC100819178
gma-u.5	100814724	uncharacterized LOC100814724
sly-u.5	101249157	uncharacterized LOC101249157
sly-u.5	101246351	uncharacterized LOC101246351
bra-r.6	103863254	uncharacterized LOC103863254
bra-r.6	103841335	uncharacterized LOC103841335
vvi-u.5	100257044	uncharacterized LOC100257044
vvi-u.5	100263968	uncharacterized LOC100263968
ppo-u.5	18100038	uncharacterized LOC18100038
mtr-u.5	11436422	uncharacterized LOC11436422
mtr-u.5	11421685	uncharacterized LOC11421685
mtr-u.5	11410874	uncharacterized LOC11410874
ghi-r.1	107957461	uncharacterized LOC107957461
ghi-r.1	107920317	uncharacterized LOC107920317
ghi-r.1	107904865	uncharacterized LOC107904865
bna-r.1	106415675	uncharacterized LOC106415675
bna-r.1	106445456	uncharacterized LOC106445456
bna-r.1	106421658	uncharacterized LOC106421658
sot-r.1	102591491	uncharacterized LOC102591491
sot-r.1	102585852	uncharacterized LOC102585852
cit-r.1	102621592	hypothetical protein
cit-r.1	102621979	uncharacterized LOC102621979
nta-r.1	107817972	uncharacterized LOC107817972
nta-r.1	107781344	uncharacterized LOC107781344
nta-r.1	107774135	uncharacterized LOC107774135

Top 50 coexpressed genes to 4327494 (osa-m.8 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4327494 (osa-m.8 coexpression data)

CoexMap"4327494"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4590 genes)

IEA

Protein

XP_015613002.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, chlo_mito 4, mito 3, nucl 1, plas 1, cysk 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1

(predict for XP_015613002.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_015613002.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-m.8 for 4327494	osa-u.5 for 4327494	osa-r.6 for 4327494	osa-e.1 for 4327494	osa-u.5 for 4339132	tae-r.2 for 123060282	tae-r.2 for 123071201	tae-r.2 for 123079557	hvu-r.1 for 123444500	hvu-r.1 for 123444705	bdi-r.1 for 100844569	zma-u.5 for 100274410	zma-u.5 for 100277503	sbi-r.1 for 8077017	ath-u.5 for AT2G38630	ath-u.5 for AT3G54190	gma-u.5 for 100819305	gma-u.5 for 100819178	gma-u.5 for 100814724	sly-u.5 for 101249157	sly-u.5 for 101246351	bra-r.6 for 103863254	bra-r.6 for 103841335	vvi-u.5 for 100257044	vvi-u.5 for 100263968	ppo-u.5 for 18100038	mtr-u.5 for 11436422	mtr-u.5 for 11421685	mtr-u.5 for 11410874	ghi-r.1 for 107957461	ghi-r.1 for 107920317	ghi-r.1 for 107904865	bna-r.1 for 106415675	bna-r.1 for 106445456	bna-r.1 for 106421658	sot-r.1 for 102591491	sot-r.1 for 102585852	cit-r.1 for 102621592	cit-r.1 for 102621979	nta-r.1 for 107817972	nta-r.1 for 107781344	nta-r.1 for 107774135

Ortholog

Ortholog ID: 3563

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC4327494

uncharacterized LOC4339132

uncharacterized LOC123060282

uncharacterized LOC123079557

uncharacterized LOC123182388

uncharacterized LOC123444500

uncharacterized LOC123444705

uncharacterized LOC100844569

Transducin/WD40 repeat-like superfamily protein

uncharacterized LOC100277503

uncharacterized LOC8077017

Transducin/WD40 repeat-like superfamily protein

uncharacterized LOC100819305

uncharacterized LOC100814724

uncharacterized LOC100803589

uncharacterized LOC101249157

uncharacterized LOC101246351

uncharacterized LOC103863254

uncharacterized LOC103841335

uncharacterized LOC100257044

uncharacterized LOC100263968

uncharacterized LOC18100038

uncharacterized LOC18108371

uncharacterized LOC11436422

uncharacterized LOC11421685

uncharacterized LOC11410874

uncharacterized LOC107920317

uncharacterized LOC107904865

uncharacterized LOC121225520

uncharacterized LOC106415675

uncharacterized LOC106445456

uncharacterized LOC106421658

uncharacterized LOC102591491

uncharacterized LOC102585852

hypothetical protein

uncharacterized LOC102621979

uncharacterized LOC107781344

uncharacterized LOC107774135

uncharacterized LOC107804659

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa00900	Terpenoid backbone biosynthesis	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3
tae03420	Nucleotide excision repair	3
tae00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2
hvu00240	Pyrimidine metabolism	2
hvu01232	Nucleotide metabolism	2
hvu01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2
bdi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00270	Cysteine and methionine metabolism	3
zma04814	Motor proteins	3
zma03440	Homologous recombination	2
zma03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi03015	mRNA surveillance pathway	2
sbi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	4
ath04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03020	RNA polymerase	2
gma04144	Endocytosis	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	3
sly04141	Protein processing in endoplasmic reticulum	2
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo00541	Biosynthesis of various nucleotide sugars	2
ppo01250	Biosynthesis of nucleotide sugars	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2
ghi04382	Cornified envelope formation	2
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	3
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00061	Fatty acid biosynthesis	2
bna00062	Fatty acid elongation	2
bna01212	Fatty acid metabolism	2
bna00540	Lipopolysaccharide biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

4327494

4339132

123060282

123079557

123182388

123444500

123444705

100844569

100274410

100277503

8077017

818445

824586

100819305

100814724

100803589

101249157

101246351

103863254

103841335

100257044

100263968

18100038

18108371

11436422

11421685

11410874

107920317

107904865

121225520

106415675

106445456

106421658

102591491

102585852

102621592

102621979

107781344

107774135

107804659

The preparation time of this page was 0.1 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	2	1	2	1	2	3	2	2	2	1	3	3	3	2	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4327494 (osa-m.8 coexpression data)

Top 50 enrichment test to 4327494 (osa-m.8 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**