ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-m.8	4332033	heparanase-like protein 1
osa-u.5	4332033	heparanase-like protein 1
osa-r.6	4332033	heparanase-like protein 1
osa-e.1	4332033	heparanase-like protein 1
osa-u.5	4352626	heparanase-like protein 1
tae-r.2	123085047	heparanase-like protein 1
tae-r.2	123098288	heparanase-like protein 1
tae-r.2	123102439	heparanase-like protein 1
hvu-r.1	123398698	heparanase-like protein 1
hvu-r.1	123449343	heparanase-like protein 2
bdi-r.1	100838514	heparanase-like protein 1
bdi-r.1	100827936	heparanase-like protein 1
zma-u.5	100279495	uncharacterized LOC100279495
zma-u.5	103640342	heparanase-like protein 1
zma-u.5	100192026	uncharacterized LOC100192026
sbi-r.1	8067461	heparanase-like protein 2
sbi-r.1	8068132	heparanase-like protein 1
ath-u.5	GUS2	glucuronidase 2
ath-u.5	GUS1	glucuronidase 1
gma-u.5	100807012	heparanase-like protein 1
gma-u.5	100806170	heparanase-like protein 1
gma-u.5	100792792	heparanase-like protein 1
sly-u.5	101258638	heparanase-like protein 1
sly-u.5	101257181	heparanase-like protein 2
bra-r.6	103847113	heparanase-like protein 1
bra-r.6	103860580	heparanase-like protein 2
vvi-u.5	100257028	heparanase-like protein 1
ppo-u.5	7453857	heparanase-like protein 1
mtr-u.5	120579640	heparanase-like protein 1
mtr-u.5	25493866	heparanase-like protein 1
ghi-r.1	107931497	heparanase-like protein 1
ghi-r.1	121211039	heparanase-like protein 1
ghi-r.1	121206435	heparanase-like protein 1
bna-r.1	106419402	heparanase-like protein 1
bna-r.1	106411460	heparanase-like protein 2
bna-r.1	106442442	heparanase-like protein 2
sot-r.1	102580531	heparanase-like protein 2
sot-r.1	102602354	heparanase-like protein 1
cit-r.1	102611386	heparanase-like protein 1
nta-r.1	107827511	heparanase-like protein 2
nta-r.1	107829601	heparanase-like protein 2
nta-r.1	107832071	heparanase-like protein 2

Top 50 coexpressed genes to 4332033 (osa-m.8 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4332033 (osa-m.8 coexpression data)

CoexMap"4332033"

[Cytoscape]

Annotation

functional annotation

KEGG

osa00531 [list] [network] Glycosaminoglycan degradation (13 genes)

GO BP

GO CC

GO:0009505 [list] [network] plant-type cell wall	(102 genes)	IEA
GO:0016020 [list] [network] membrane	(3446 genes)	IEA

GO MF

GO:0004566 [list] [network] beta-glucuronidase activity

(5 genes)

IEA

Protein

XP_015631835.1 [sequence] [blastp]
XP_015631836.1 [sequence] [blastp]
XP_015631837.1 [sequence] [blastp]
XP_066165180.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_015631835.1)
cyto 4, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_015631836.1)
cyto 4, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_015631837.1)
cyto 4, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_066165180.1)

Subcellular
localization
TargetP

scret 9	(predict for XP_015631835.1)
scret 9	(predict for XP_015631836.1)
scret 9	(predict for XP_015631837.1)
scret 9	(predict for XP_066165180.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-m.8 for 4332033	osa-u.5 for 4332033	osa-r.6 for 4332033	osa-e.1 for 4332033	osa-u.5 for 4352626	tae-r.2 for 123085047	tae-r.2 for 123098288	tae-r.2 for 123102439	hvu-r.1 for 123398698	hvu-r.1 for 123449343	bdi-r.1 for 100838514	bdi-r.1 for 100827936	zma-u.5 for 100279495	zma-u.5 for 103640342	zma-u.5 for 100192026	sbi-r.1 for 8067461	sbi-r.1 for 8068132	ath-u.5 for GUS2	ath-u.5 for GUS1	gma-u.5 for 100807012	gma-u.5 for 100806170	gma-u.5 for 100792792	sly-u.5 for 101258638	sly-u.5 for 101257181	bra-r.6 for 103847113	bra-r.6 for 103860580	vvi-u.5 for 100257028	ppo-u.5 for 7453857	mtr-u.5 for 120579640	mtr-u.5 for 25493866	ghi-r.1 for 107931497	ghi-r.1 for 121211039	ghi-r.1 for 121206435	bna-r.1 for 106419402	bna-r.1 for 106411460	bna-r.1 for 106442442	sot-r.1 for 102580531	sot-r.1 for 102602354	cit-r.1 for 102611386	nta-r.1 for 107827511	nta-r.1 for 107829601	nta-r.1 for 107832071

Ortholog

Ortholog ID: 3614

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

GUS2

GUS1

Function^*

heparanase-like protein 1

heparanase-like protein 2

heparanase-like protein 1

heparanase-like protein 2

heparanase-like protein 1

uncharacterized LOC100279495

heparanase-like protein 1

uncharacterized LOC100192026

heparanase-like protein 2

heparanase-like protein 1

glucuronidase 2

glucuronidase 1

heparanase-like protein 1

heparanase-like protein 2

heparanase-like protein 1

heparanase-like protein 2

heparanase-like protein 1

heparanase-like protein 2

heparanase-like protein 1

heparanase-like protein 2

heparanase-like protein 1

heparanase-like protein 2

heparanase-like protein 1

heparanase-like protein 2

heparanase-like protein 1

heparanase-like protein 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae04517	IgSF CAM signaling	3
tae05100	Bacterial invasion of epithelial cells	3
tae00531	Glycosaminoglycan degradation	3
tae04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	7
tae00531	Glycosaminoglycan degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	3
tae04517	IgSF CAM signaling	3
tae05100	Bacterial invasion of epithelial cells	3
tae00531	Glycosaminoglycan degradation	3
tae04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04517	IgSF CAM signaling	3
hvu04145	Phagosome	2
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi04626	Plant-pathogen interaction	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2
zma01240	Biosynthesis of cofactors	2
zma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01230	Biosynthesis of amino acids	3
sbi00760	Nicotinate and nicotinamide metabolism	2
sbi00061	Fatty acid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	5
ath01200	Carbon metabolism	4
ath01230	Biosynthesis of amino acids	3
ath00020	Citrate cycle (TCA cycle)	2
ath01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00531	Glycosaminoglycan degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00531	Glycosaminoglycan degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00531	Glycosaminoglycan degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	3
mtr01200	Carbon metabolism	3
mtr00531	Glycosaminoglycan degradation	3
mtr00030	Pentose phosphate pathway	2
mtr00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00460	Cyanoamino acid metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00999	Biosynthesis of various plant secondary metabolites	2
ghi00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00460	Cyanoamino acid metabolism	2
ghi00500	Starch and sucrose metabolism	2
ghi00999	Biosynthesis of various plant secondary metabolites	2
ghi00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00480	Glutathione metabolism	7
bna00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00531	Glycosaminoglycan degradation	2
bna00052	Galactose metabolism	2
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	3
sot00710	Carbon fixation by Calvin cycle	3
sot01200	Carbon metabolism	3
sot01230	Biosynthesis of amino acids	3
sot00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2
nta00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00531	Glycosaminoglycan degradation	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00531	Glycosaminoglycan degradation	2
nta04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

4332033

4352626

123098288

123119642

123093006

123398698

123449343

100838514

100827936

100279495

103640342

100192026

8067461

8068132

830676

836246

100807012

100806170

100782283

101258638

101257181

103847113

103860580

100257028

7453857

25488662

25488661

107931497

121211039

107951250

106411460

106442442

106446111

102580531

102602354

102611386

107827511

107832071

107830348

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Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	2	2	3	2	2	3	2	2	1	1	2	3	3	2	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4332033 (osa-m.8 coexpression data)

Top 50 enrichment test to 4332033 (osa-m.8 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**