ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-m.8	4339657	THO complex subunit 7A
osa-u.5	4339657	THO complex subunit 7A
osa-r.6	4339657	THO complex subunit 7A
osa-e.1	4339657	THO complex subunit 7A
osa-u.5	4344717	THO complex subunit 7B
tae-r.2	123143492	THO complex subunit 7B
tae-r.2	123136021	THO complex subunit 7B
tae-r.2	123131971	THO complex subunit 7B
hvu-r.1	123402630	THO complex subunit 7B
bdi-r.1	100834629	THO complex subunit 7B
bdi-r.1	100831686	THO complex subunit 7B
zma-u.5	100283954	ngg1 interacting factor 3 like 1 binding protein 1
zma-u.5	103631020	THO complex subunit 7B
sbi-r.1	8077975	THO complex subunit 7B
ath-u.5	THO7	Tho complex subunit 7/Mft1p
ath-u.5	THO7	Tho complex subunit 7/Mft1p
gma-u.5	100783192	THO complex subunit 7A
gma-u.5	100305782	uncharacterized LOC100305782
sly-u.5	101268064	THO complex subunit 7A
sly-u.5	101254930	THO complex subunit 7A
bra-r.6	103855121	THO complex subunit 7B
vvi-u.5	100256436	THO complex subunit 7A
ppo-u.5	7493911	THO complex subunit 7A
ppo-u.5	18104189	THO complex subunit 7A
mtr-u.5	11441838	THO complex subunit 7A
ghi-r.1	107950546	THO complex subunit 7A
ghi-r.1	107924564	THO complex subunit 7A
bna-r.1	106435949	THO complex subunit 7B
sot-r.1	102592509	THO complex subunit 7A-like
sot-r.1	102602117	THO complex subunit 7A-like
cit-r.1	102624504	THO complex subunit 7B
nta-r.1	107798376	THO complex subunit 7A
nta-r.1	107775328	THO complex subunit 7A
nta-r.1	107759617	THO complex subunit 7A-like
cre-r.1	CHLRE_03g182350v5	uncharacterized protein

Top 50 coexpressed genes to 4339657 (osa-m.8 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4339657 (osa-m.8 coexpression data)

CoexMap"4339657"

[Cytoscape]

Annotation

functional annotation

KEGG

osa03013 [list] [network] Nucleocytoplasmic transport (110 genes)

osa03040 [list] [network] Spliceosome (204 genes)

GO BP

GO:0006406 [list] [network] mRNA export from nucleus	(29 genes)	IEA
GO:0006397 [list] [network] mRNA processing	(212 genes)	IEA

GO CC

GO:0000445 [list] [network] THO complex part of transcription export complex

(6 genes)

IEA

GO MF

Protein

XP_015638044.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, chlo 3, nucl 1

(predict for XP_015638044.1)

Subcellular
localization
TargetP

other 7, mito 5

(predict for XP_015638044.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-m.8 for 4339657	osa-u.5 for 4339657	osa-r.6 for 4339657	osa-e.1 for 4339657	osa-u.5 for 4344717	tae-r.2 for 123143492	tae-r.2 for 123136021	tae-r.2 for 123131971	hvu-r.1 for 123402630	bdi-r.1 for 100834629	bdi-r.1 for 100831686	zma-u.5 for 100283954	zma-u.5 for 103631020	sbi-r.1 for 8077975	ath-u.5 for THO7	ath-u.5 for THO7	gma-u.5 for 100783192	gma-u.5 for 100305782	sly-u.5 for 101268064	sly-u.5 for 101254930	bra-r.6 for 103855121	vvi-u.5 for 100256436	ppo-u.5 for 7493911	ppo-u.5 for 18104189	mtr-u.5 for 11441838	ghi-r.1 for 107950546	ghi-r.1 for 107924564	bna-r.1 for 106435949	sot-r.1 for 102592509	sot-r.1 for 102602117	cit-r.1 for 102624504	nta-r.1 for 107798376	nta-r.1 for 107775328	nta-r.1 for 107759617	cre-r.1 for CHLRE_03g182350v5

Ortholog

Ortholog ID: 6268

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

THO7

Function^*

THO complex subunit 7A

THO complex subunit 7B

ngg1 interacting factor 3 like 1 binding protein 1

THO complex subunit 7B

Tho complex subunit 7/Mft1p

THO complex subunit 7A

uncharacterized LOC100305782

THO complex subunit 7A

THO complex subunit 7B

THO complex subunit 7A

THO complex subunit 7B

THO complex subunit 7A-like

THO complex subunit 7B

THO complex subunit 7A

THO complex subunit 7A-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3
tae04626	Plant-pathogen interaction	3
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3
tae04626	Plant-pathogen interaction	3
tae03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03040	Spliceosome	3
tae04626	Plant-pathogen interaction	3
tae03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	8
bdi03040	Spliceosome	3
bdi03013	Nucleocytoplasmic transport	2
bdi03020	RNA polymerase	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	6
bdi03013	Nucleocytoplasmic transport	3
bdi04141	Protein processing in endoplasmic reticulum	2
bdi03040	Spliceosome	2
bdi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	3
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03020	RNA polymerase	2
gma03420	Nucleotide excision repair	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	11
gma03020	RNA polymerase	2
gma03013	Nucleocytoplasmic transport	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03013	Nucleocytoplasmic transport	2
sly03020	RNA polymerase	2
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	4
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	3
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03013	Nucleocytoplasmic transport	3
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna03015	mRNA surveillance pathway	2
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03013	Nucleocytoplasmic transport	2
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	3
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	11
nta00190	Oxidative phosphorylation	4
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03040	Spliceosome	2
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	11
cre03018	RNA degradation	2
cre03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

4339657

4344717

123143492

123136021

123131971

123402630

100834629

100831686

100283954

103631020

8077975

821174

831542

100783192

100305782

101268064

101254930

103855121

100256436

7493911

18104189

11441838

107950546

107924564

106435949

102592509

102602117

102624504

107798376

107775328

107759617

5728490

The preparation time of this page was 0.1 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	3	1	2	2	1	2	2	2	1	1	2	1	2	1	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4339657 (osa-m.8 coexpression data)

Top 50 enrichment test to 4339657 (osa-m.8 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**