ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-u.5	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-r.7	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-e.2	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-m.4.bio	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-m.4.hor	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-m.4.lig	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-m.4.str	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-m.4.tis	AT2G02730	GRIP/coiled-coil protein, putative (DUF1664)
ath-u.5	AT1G04960	golgin family A protein (DUF1664)
ath-u.5	AT1G27000	GRIP/coiled-coil protein, putative (DUF1664)
ath-u.5	AT1G24267	bZIP transcription factor, putative (DUF1664)
bra-r.6	103839055	uncharacterized LOC103839055
bra-r.6	103839440	uncharacterized LOC103839440
bna-r.1	106430467	uncharacterized LOC106430467
bna-r.1	106397541	uncharacterized LOC106397541
ghi-r.1	107892098	uncharacterized LOC107892098
ghi-r.1	107894077	uncharacterized LOC107894077
ghi-r.1	107898483	uncharacterized LOC107898483
cit-r.1	102629348	uncharacterized LOC102629348
cit-r.1	102621410	uncharacterized LOC102621410
cit-r.1	102610706	uncharacterized LOC102610706
gma-u.5	BZIP108	putative bZIP domain class transcription factor
gma-u.5	BZIP55	bZIP transcription factor 55
gma-u.5	BZIP109	bZIP transcription factor bZIP109
vvi-u.5	100261969	uncharacterized LOC100261969
vvi-u.5	100248973	uncharacterized LOC100248973
vvi-u.5	100246806	uncharacterized LOC100246806
ppo-u.5	7471497	uncharacterized LOC7471497
ppo-u.5	7481210	uncharacterized LOC7481210
ppo-u.5	7458276	uncharacterized LOC7458276
mtr-u.5	11429061	uncharacterized LOC11429061
mtr-u.5	11419070	uncharacterized LOC11419070
mtr-u.5	11446825	uncharacterized LOC11446825
sly-u.5	101248698	uncharacterized LOC101248698
sly-u.5	101250989	uncharacterized LOC101250989
sly-u.5	101265351	uncharacterized LOC101265351
sot-r.1	102602238	uncharacterized LOC102602238
sot-r.1	102580510	uncharacterized LOC102580510
sot-r.1	102597742	uncharacterized LOC102597742
nta-r.1	107767798	uncharacterized LOC107767798
nta-r.1	107790180	uncharacterized LOC107790180
nta-r.1	107792350	uncharacterized LOC107792350
osa-u.5	4337995	uncharacterized LOC4337995
osa-u.5	4337544	uncharacterized LOC4337544
zma-u.5	100382685	Putative DUF1664 domain family protein
zma-u.5	100192639	uncharacterized LOC100192639
tae-r.2	123060231	uncharacterized LOC123060231
tae-r.2	123040939	uncharacterized LOC123040939
hvu-r.1	123427139	uncharacterized LOC123427139
hvu-r.1	123399310	uncharacterized LOC123399310
sbi-r.1	8085064	uncharacterized LOC8085064
sbi-r.1	8066588	uncharacterized LOC8066588
sbi-r.1	110432858	uncharacterized LOC110432858
bdi-r.1	100835843	uncharacterized LOC100835843
bdi-r.1	100836333	uncharacterized LOC100836333
bdi-r.1	100845945	uncharacterized LOC100845945
cre-r.1	CHLRE_16g668350v5	uncharacterized protein

Top 50 coexpressed genes to AT2G02730 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G02730 (ath-m.9 coexpression data)

CoexMap"814802"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_001324283.1 [sequence] [blastp]
NP_178376.1 [sequence] [blastp]
NP_973402.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, cyto_E.R. 3, nucl 2, chlo 1	(predict for NP_001324283.1)
cyto 5, cyto_E.R. 3, nucl 2, chlo 1	(predict for NP_178376.1)
cyto 5, cyto_E.R. 3, nucl 2, chlo 1	(predict for NP_973402.1)

Subcellular
localization
TargetP

scret 7	(predict for NP_001324283.1)
scret 7	(predict for NP_178376.1)
scret 7	(predict for NP_973402.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT2G02730	ath-u.5 for AT2G02730	ath-r.7 for AT2G02730	ath-e.2 for AT2G02730	ath-m.4.bio for AT2G02730	ath-m.4.hor for AT2G02730	ath-m.4.lig for AT2G02730	ath-m.4.str for AT2G02730	ath-m.4.tis for AT2G02730	ath-u.5 for AT1G04960	ath-u.5 for AT1G27000	ath-u.5 for AT1G24267	bra-r.6 for 103839055	bra-r.6 for 103839440	bna-r.1 for 106430467	bna-r.1 for 106397541	ghi-r.1 for 107892098	ghi-r.1 for 107894077	ghi-r.1 for 107898483	cit-r.1 for 102629348	cit-r.1 for 102621410	cit-r.1 for 102610706	gma-u.5 for BZIP108	gma-u.5 for BZIP55	gma-u.5 for BZIP109	vvi-u.5 for 100261969	vvi-u.5 for 100248973	vvi-u.5 for 100246806	ppo-u.5 for 7471497	ppo-u.5 for 7481210	ppo-u.5 for 7458276	mtr-u.5 for 11429061	mtr-u.5 for 11419070	mtr-u.5 for 11446825	sly-u.5 for 101248698	sly-u.5 for 101250989	sly-u.5 for 101265351	sot-r.1 for 102602238	sot-r.1 for 102580510	sot-r.1 for 102597742	nta-r.1 for 107767798	nta-r.1 for 107790180	nta-r.1 for 107792350	osa-u.5 for 4337995	osa-u.5 for 4337544	zma-u.5 for 100382685	zma-u.5 for 100192639	tae-r.2 for 123060231	tae-r.2 for 123040939	hvu-r.1 for 123427139	hvu-r.1 for 123399310	sbi-r.1 for 8085064	sbi-r.1 for 8066588	sbi-r.1 for 110432858	bdi-r.1 for 100835843	bdi-r.1 for 100836333	bdi-r.1 for 100845945	cre-r.1 for CHLRE_16g668350v5

Ortholog

Ortholog ID: 637

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

BZIP108

BZIP55

BZIP109

Function^*

GRIP/coiled-coil protein, putative (DUF1664)

bZIP transcription factor, putative (DUF1664)

uncharacterized LOC103835413

uncharacterized LOC106430467

uncharacterized LOC106367517

uncharacterized LOC107922735

uncharacterized LOC121228291

uncharacterized LOC107886365

uncharacterized LOC102629348

uncharacterized LOC102621410

uncharacterized LOC102610706

putative bZIP domain class transcription factor

bZIP transcription factor 55

bZIP transcription factor bZIP109

uncharacterized LOC100261969

uncharacterized LOC100248973

uncharacterized LOC100246806

uncharacterized LOC7471497

uncharacterized LOC7481210

uncharacterized LOC7474230

uncharacterized LOC11429061

uncharacterized LOC11419070

uncharacterized LOC11446825

uncharacterized LOC101248698

uncharacterized LOC101250989

uncharacterized LOC101265351

uncharacterized LOC102580510

uncharacterized LOC102597742

uncharacterized LOC102584187

uncharacterized LOC107790180

uncharacterized LOC107805499

uncharacterized LOC107760190

uncharacterized LOC4337995

uncharacterized LOC4326458

uncharacterized LOC9271634

uncharacterized LOC100276494

uncharacterized LOC123060231

uncharacterized LOC123068728

uncharacterized LOC123427139

uncharacterized LOC123442763

uncharacterized LOC8085064

uncharacterized LOC8066588

uncharacterized LOC110432858

uncharacterized LOC100835843

uncharacterized LOC100845945

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	8
ath00020	Citrate cycle (TCA cycle)	7
ath01210	2-Oxocarboxylic acid metabolism	7
ath00010	Glycolysis / Gluconeogenesis	5
ath01230	Biosynthesis of amino acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5
bna04141	Protein processing in endoplasmic reticulum	5
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna04141	Protein processing in endoplasmic reticulum	4
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi04141	Protein processing in endoplasmic reticulum	3
ghi04144	Endocytosis	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00510	N-Glycan biosynthesis	4
ghi00513	Various types of N-glycan biosynthesis	4
ghi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00540	Lipopolysaccharide biosynthesis	2
ghi03040	Spliceosome	2
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03022	Basal transcription factors	2
gma03015	mRNA surveillance pathway	2
gma04136	Autophagy - other	2
gma04382	Cornified envelope formation	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2
vvi03272	Virion - Hepatitis viruses	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr04626	Plant-pathogen interaction	2
mtr04016	MAPK signaling pathway - plant	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4
mtr03083	Polycomb repressive complex	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	7
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	7
sot03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00510	N-Glycan biosynthesis	2
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta01240	Biosynthesis of cofactors	3
nta00760	Nicotinate and nicotinamide metabolism	3
nta00010	Glycolysis / Gluconeogenesis	2
nta00053	Ascorbate and aldarate metabolism	2
nta00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03250	Viral life cycle - HIV-1	2
osa04144	Endocytosis	2
osa04120	Ubiquitin mediated proteolysis	2
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	4
hvu00071	Fatty acid degradation	2
hvu01212	Fatty acid metabolism	2
hvu04120	Ubiquitin mediated proteolysis	2
hvu00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04145	Phagosome	5
sbi00190	Oxidative phosphorylation	4
sbi04142	Lysosome	3
sbi00280	Valine, leucine and isoleucine degradation	2
sbi00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2
bdi04145	Phagosome	2
bdi04148	Efferocytosis	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	3
bdi03250	Viral life cycle - HIV-1	2
bdi03272	Virion - Hepatitis viruses	2
bdi04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

839590

839042

839041

103835413

106430467

106367517

107922735

121228291

107886365

102629348

102621410

102610706

780547

778129

778138

100261969

100248973

100246806

7471497

7481210

7474230

11429061

11419070

11446825

101248698

101250989

101265351

102580510

102597742

102584187

107790180

107805499

107760190

4337995

4326458

9271634

100276494

123060231

123068728

123427139

123442763

8085064

8066588

110432858

100835843

100845945

5717410

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	2	2	3	3	3	3	3	3	3	3	3	2	2	2	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G02730 (ath-m.9 coexpression data)

Top 50 enrichment test to AT2G02730 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**