ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT2G03500	Homeodomain-like superfamily protein
ath-u.5	AT2G03500	Homeodomain-like superfamily protein
ath-r.7	AT2G03500	Homeodomain-like superfamily protein
ath-e.2	AT2G03500	Homeodomain-like superfamily protein
ath-m.4.bio	AT2G03500	Homeodomain-like superfamily protein
ath-m.4.hor	AT2G03500	Homeodomain-like superfamily protein
ath-m.4.lig	AT2G03500	Homeodomain-like superfamily protein
ath-m.4.str	AT2G03500	Homeodomain-like superfamily protein
ath-m.4.tis	AT2G03500	Homeodomain-like superfamily protein
bra-r.6	103853942	myb family transcription factor EFM
bra-r.6	103875404	myb family transcription factor EFM
bna-r.1	125580152	myb family transcription factor EFM-like
bna-r.1	106379796	myb family transcription factor EFM-like
bna-r.1	106390418	myb family transcription factor EFM
ghi-r.1	107907426	myb family transcription factor EFM
ghi-r.1	107930787	myb family transcription factor EFM
ghi-r.1	107932945	myb family transcription factor EFM
cit-r.1	102608032	myb family transcription factor EFM
gma-u.5	100809196	myb family transcription factor EFM
gma-u.5	100807925	myb family transcription factor EFM
vvi-u.5	100250892	myb family transcription factor EFM
ppo-u.5	7458743	myb family transcription factor EFM
mtr-u.5	11443648	myb family transcription factor EFM
sly-u.5	101267682	myb family transcription factor EFM
sot-r.1	102581432	transcription factor LUX
nta-r.1	107759940	myb family transcription factor EFM
nta-r.1	107773353	myb family transcription factor EFM-like
osa-u.5	4326224	transcription factor NIGTH1-like
zma-u.5	107522107	uncharacterized LOC107522107
tae-r.2	123077564	transcription factor NIGTH1
tae-r.2	123069047	transcription factor NIGTH1
tae-r.2	123058025	transcription factor NIGTH1
hvu-r.1	123439547	transcription factor NIGTH1-like
sbi-r.1	8056535	transcription factor NIGTH1
bdi-r.1	100822315	transcription factor NIGTH1

Annotation

functional annotation

KEGG

GO BP

GO:0034244 [list] [network] negative regulation of transcription elongation by RNA polymerase II	(12 genes)	IPI
GO:0048579 [list] [network] negative regulation of long-day photoperiodism, flowering	(14 genes)	IMP
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway	(41 genes)	IEP
GO:0009266 [list] [network] response to temperature stimulus	(682 genes)	IEP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	TAS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_027544.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, extr 1, vacu 1

(predict for NP_027544.1)

Subcellular
localization
TargetP

other 7

(predict for NP_027544.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT2G03500	ath-u.5 for AT2G03500	ath-r.7 for AT2G03500	ath-e.2 for AT2G03500	ath-m.4.bio for AT2G03500	ath-m.4.hor for AT2G03500	ath-m.4.lig for AT2G03500	ath-m.4.str for AT2G03500	ath-m.4.tis for AT2G03500	bra-r.6 for 103853942	bra-r.6 for 103875404	bna-r.1 for 125580152	bna-r.1 for 106379796	bna-r.1 for 106390418	ghi-r.1 for 107907426	ghi-r.1 for 107930787	ghi-r.1 for 107932945	cit-r.1 for 102608032	gma-u.5 for 100809196	gma-u.5 for 100807925	vvi-u.5 for 100250892	ppo-u.5 for 7458743	mtr-u.5 for 11443648	sly-u.5 for 101267682	sot-r.1 for 102581432	nta-r.1 for 107759940	nta-r.1 for 107773353	osa-u.5 for 4326224	zma-u.5 for 107522107	tae-r.2 for 123077564	tae-r.2 for 123069047	tae-r.2 for 123058025	hvu-r.1 for 123439547	sbi-r.1 for 8056535	bdi-r.1 for 100822315