ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	SCL21	SCARECROW-like 21
ath-u.5	SCL21	SCARECROW-like 21
ath-r.7	SCL21	SCARECROW-like 21
ath-e.2	SCL21	SCARECROW-like 21
ath-m.4.bio	SCL21	SCARECROW-like 21
ath-m.4.hor	SCL21	SCARECROW-like 21
ath-m.4.lig	SCL21	SCARECROW-like 21
ath-m.4.str	SCL21	SCARECROW-like 21
ath-m.4.tis	SCL21	SCARECROW-like 21
ath-u.5	SCL13	SCARECROW-like 13
ath-u.5	PAT1	GRAS family transcription factor
ath-u.5	SCL5	scarecrow-like 5
bra-r.6	103833999	scarecrow-like protein 13
bra-r.6	103837238	scarecrow-like transcription factor PAT1
bna-r.1	111197883	scarecrow-like transcription factor PAT1
bna-r.1	106369310	scarecrow-like protein 5
bna-r.1	106428184	scarecrow-like transcription factor PAT1
ghi-r.1	107905692	scarecrow-like protein 13
ghi-r.1	107907401	scarecrow-like protein 13
ghi-r.1	107912605	scarecrow-like transcription factor PAT1
cit-r.1	102621664	scarecrow-like transcription factor PAT1
cit-r.1	102612934	scarecrow-like protein 21
cit-r.1	102620670	scarecrow-like protein 13
gma-u.5	100817987	scarecrow-like protein 13
gma-u.5	100796496	scarecrow-like transcription factor PAT1
gma-u.5	100808300	scarecrow-like transcription factor PAT1
vvi-u.5	100245041	scarecrow-like protein 21
vvi-u.5	100250258	scarecrow-like protein 21
vvi-u.5	100261403	scarecrow-like transcription factor PAT1
ppo-u.5	7463692	scarecrow-like protein 13
ppo-u.5	7487530	scarecrow-like transcription factor PAT1
ppo-u.5	7468554	scarecrow-like transcription factor PAT1
mtr-u.5	11439575	scarecrow-like protein 13
mtr-u.5	11418702	scarecrow-like transcription factor PAT1
sly-u.5	101252411	scarecrow-like transcription factor PAT1
sly-u.5	101247427	scarecrow-like protein 13
sly-u.5	101253917	scarecrow-like protein 21
sot-r.1	102590638	scarecrow-like protein 13
sot-r.1	102590894	scarecrow-like protein 13
sot-r.1	102591653	scarecrow-like protein 21
nta-r.1	107773439	scarecrow-like protein 13
nta-r.1	107774099	scarecrow-like protein 13
nta-r.1	107782037	scarecrow-like transcription factor PAT1
osa-u.5	4348466	scarecrow-like transcription factor PAT1
osa-u.5	4343735	chitin-inducible gibberellin-responsive protein 2-like
osa-u.5	4331920	scarecrow-like protein 21
zma-u.5	100502252	uncharacterized LOC100502252
zma-u.5	100384069	uncharacterized LOC100384069
zma-u.5	100383464	uncharacterized LOC100383464
tae-r.2	123188130	chitin-inducible gibberellin-responsive protein 2
tae-r.2	123123002	scarecrow-like protein 21
tae-r.2	123044417	chitin-inducible gibberellin-responsive protein 2
hvu-r.1	123452466	scarecrow-like protein 21
hvu-r.1	123449451	scarecrow-like protein 21
hvu-r.1	123425543	chitin-inducible gibberellin-responsive protein 2-like
sbi-r.1	8054264	scarecrow-like protein 21
sbi-r.1	8058364	chitin-inducible gibberellin-responsive protein 2
bdi-r.1	100837965	chitin-inducible gibberellin-responsive protein 2
bdi-r.1	100831355	scarecrow-like protein 21

Top 50 coexpressed genes to SCL21 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to SCL21 (ath-m.9 coexpression data)

CoexMap"815036"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1618 genes)

TAS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_178566.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, cysk 1, nucl_plas 1

(predict for NP_178566.1)

Subcellular
localization
TargetP

other 9

(predict for NP_178566.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for SCL21	ath-u.5 for SCL21	ath-r.7 for SCL21	ath-e.2 for SCL21	ath-m.4.bio for SCL21	ath-m.4.hor for SCL21	ath-m.4.lig for SCL21	ath-m.4.str for SCL21	ath-m.4.tis for SCL21	ath-u.5 for SCL13	ath-u.5 for PAT1	ath-u.5 for SCL5	bra-r.6 for 103833999	bra-r.6 for 103837238	bna-r.1 for 111197883	bna-r.1 for 106369310	bna-r.1 for 106428184	ghi-r.1 for 107905692	ghi-r.1 for 107907401	ghi-r.1 for 107912605	cit-r.1 for 102621664	cit-r.1 for 102612934	cit-r.1 for 102620670	gma-u.5 for 100817987	gma-u.5 for 100796496	gma-u.5 for 100808300	vvi-u.5 for 100245041	vvi-u.5 for 100250258	vvi-u.5 for 100261403	ppo-u.5 for 7463692	ppo-u.5 for 7487530	ppo-u.5 for 7468554	mtr-u.5 for 11439575	mtr-u.5 for 11418702	sly-u.5 for 101252411	sly-u.5 for 101247427	sly-u.5 for 101253917	sot-r.1 for 102590638	sot-r.1 for 102590894	sot-r.1 for 102591653	nta-r.1 for 107773439	nta-r.1 for 107774099	nta-r.1 for 107782037	osa-u.5 for 4348466	osa-u.5 for 4343735	osa-u.5 for 4331920	zma-u.5 for 100502252	zma-u.5 for 100384069	zma-u.5 for 100383464	tae-r.2 for 123188130	tae-r.2 for 123123002	tae-r.2 for 123044417	hvu-r.1 for 123452466	hvu-r.1 for 123449451	hvu-r.1 for 123425543	sbi-r.1 for 8054264	sbi-r.1 for 8058364	bdi-r.1 for 100837965	bdi-r.1 for 100831355

Ortholog

Ortholog ID: 912

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SCL13

PAT1

SCL5

Function^*

SCARECROW-like 13

GRAS family transcription factor

scarecrow-like 5