ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT2G16980	Major facilitator superfamily protein
ath-u.5	AT2G16980	Major facilitator superfamily protein
ath-r.7	AT2G16980	Major facilitator superfamily protein
ath-e.2	AT2G16980	Major facilitator superfamily protein
ath-m.4.bio	AT2G16980	Major facilitator superfamily protein
ath-m.4.hor	AT2G16980	Major facilitator superfamily protein
ath-m.4.lig	AT2G16980	Major facilitator superfamily protein
ath-m.4.str	AT2G16980	Major facilitator superfamily protein
ath-m.4.tis	AT2G16980	Major facilitator superfamily protein
ath-u.5	AT2G16990	Major facilitator superfamily protein
ath-u.5	AT5G42210	Major facilitator superfamily protein
bra-r.6	103860499	tetracycline resistance protein, class E
bra-r.6	103846003	multidrug resistance protein 2
bra-r.6	103849042	hippocampus abundant transcript-like protein 1
bna-r.1	106447820	hippocampus abundant transcript 1 protein-like
bna-r.1	106439823	multidrug resistance protein 2-like
ghi-r.1	107927954	hippocampus abundant transcript 1 protein
ghi-r.1	107916544	hippocampus abundant transcript-like protein 1
ghi-r.1	107908637	hippocampus abundant transcript 1 protein
cit-r.1	102613590	uncharacterized LOC102613590
cit-r.1	102622346	uncharacterized LOC102622346
cit-r.1	102620188	uncharacterized LOC102620188
gma-u.5	100789302	hippocampus abundant transcript-like protein 1
vvi-u.5	100260232	uncharacterized LOC100260232
vvi-u.5	100257341	uncharacterized LOC100257341
vvi-u.5	100252243	uncharacterized LOC100252243
ppo-u.5	7474984	uncharacterized LOC7474984
ppo-u.5	7453664	uncharacterized LOC7453664
ppo-u.5	7477174	uncharacterized LOC7477174
mtr-u.5	25485646	hippocampus abundant transcript-like protein 1
mtr-u.5	11405374	hippocampus abundant transcript-like protein 1
sly-u.5	101248671	uncharacterized LOC101248671
sly-u.5	101246199	uncharacterized LOC101246199
sly-u.5	101246686	uncharacterized LOC101246686
sot-r.1	102596965	hippocampus abundant transcript-like protein 1
sot-r.1	102586357	hippocampus abundant transcript-like protein 1
sot-r.1	102583153	tetracycline resistance protein, class A-like
nta-r.1	107832780	uncharacterized LOC107832780
nta-r.1	107826793	uncharacterized LOC107826793
osa-u.5	4330257	uncharacterized LOC4330257
osa-u.5	4349793	uncharacterized LOC4349793
osa-u.5	9272544	uncharacterized LOC9272544
zma-u.5	100272739	uncharacterized LOC100272739
zma-u.5	100191596	tetracycline transporter protein
zma-u.5	100277128	uncharacterized LOC100277128
tae-r.2	123124560	uncharacterized LOC123124560
tae-r.2	123181561	tetracycline resistance protein, class A
tae-r.2	123145050	hippocampus abundant transcript 1 protein
hvu-r.1	123395308	tetracycline resistance protein, class D-like
hvu-r.1	123437744	tetracycline resistance protein, class A-like
sbi-r.1	8062849	hippocampus abundant transcript 1 protein
sbi-r.1	8076055	hippocampus abundant transcript 1 protein
sbi-r.1	8058540	tetracycline resistance protein, class H
bdi-r.1	100833620	tetracycline resistance protein, class A
bdi-r.1	100833312	tetracycline resistance protein, class H
bdi-r.1	100835722	hippocampus abundant transcript 1 protein
cre-r.1	CHLRE_16g656150v5	uncharacterized protein

Top 50 coexpressed genes to AT2G16980 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G16980 (ath-m.9 coexpression data)

CoexMap"816201"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0015904 [list] [network] tetracycline transmembrane transport	(2 genes)	ISS
GO:0006855 [list] [network] xenobiotic transmembrane transport	(6 genes)	ISS
GO:0098656 [list] [network] monoatomic anion transmembrane transport	(16 genes)	ISS
GO:0055085 [list] [network] transmembrane transport	(543 genes)	IEA

GO CC

GO:0005739 [list] [network] mitochondrion

(4244 genes)

ISM

GO MF

GO:0008493 [list] [network] tetracycline transmembrane transporter activity	(3 genes)	ISS
GO:0022857 [list] [network] transmembrane transporter activity	(1015 genes)	IEA

Protein

NP_001324578.1 [sequence] [blastp]
NP_001324579.1 [sequence] [blastp]
NP_001324580.1 [sequence] [blastp]
NP_001324581.1 [sequence] [blastp]
NP_179290.4 [sequence] [blastp]
NP_973476.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, plas 2, E.R. 2, cyto_nucl 2, E.R._plas 2	(predict for NP_001324578.1)
cyto 3, E.R. 2, pero 2, cyto_plas 2	(predict for NP_001324579.1)
cyto 4, nucl 1, plas 1, E.R. 1, nucl_plas 1, E.R._plas 1	(predict for NP_001324580.1)
chlo 4, plas 4, E.R. 2, chlo_mito 2	(predict for NP_001324581.1)
cyto 4, pero 2, plas 1, E.R. 1, E.R._plas 1	(predict for NP_179290.4)
extr 4, chlo 1, plas 1, vacu 1, cyto 1, E.R. 1, chlo_mito 1, nucl_plas 1, golg_plas 1, cysk_plas 1, mito_plas 1, cyto_E.R. 1	(predict for NP_973476.1)

Subcellular
localization
TargetP

other 8, mito 4	(predict for NP_001324578.1)
other 8, mito 4	(predict for NP_001324579.1)
other 8, mito 4	(predict for NP_001324580.1)
other 4, chlo 3	(predict for NP_001324581.1)
other 8, mito 4	(predict for NP_179290.4)
scret 8	(predict for NP_973476.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT2G16980	ath-u.5 for AT2G16980	ath-r.7 for AT2G16980	ath-e.2 for AT2G16980	ath-m.4.bio for AT2G16980	ath-m.4.hor for AT2G16980	ath-m.4.lig for AT2G16980	ath-m.4.str for AT2G16980	ath-m.4.tis for AT2G16980	ath-u.5 for AT2G16990	ath-u.5 for AT5G42210	bra-r.6 for 103860499	bra-r.6 for 103846003	bra-r.6 for 103849042	bna-r.1 for 106447820	bna-r.1 for 106439823	ghi-r.1 for 107927954	ghi-r.1 for 107916544	ghi-r.1 for 107908637	cit-r.1 for 102613590	cit-r.1 for 102622346	cit-r.1 for 102620188	gma-u.5 for 100789302	vvi-u.5 for 100260232	vvi-u.5 for 100257341	vvi-u.5 for 100252243	ppo-u.5 for 7474984	ppo-u.5 for 7453664	ppo-u.5 for 7477174	mtr-u.5 for 25485646	mtr-u.5 for 11405374	sly-u.5 for 101248671	sly-u.5 for 101246199	sly-u.5 for 101246686	sot-r.1 for 102596965	sot-r.1 for 102586357	sot-r.1 for 102583153	nta-r.1 for 107832780	nta-r.1 for 107826793	osa-u.5 for 4330257	osa-u.5 for 4349793	osa-u.5 for 9272544	zma-u.5 for 100272739	zma-u.5 for 100191596	zma-u.5 for 100277128	tae-r.2 for 123124560	tae-r.2 for 123181561	tae-r.2 for 123145050	hvu-r.1 for 123395308	hvu-r.1 for 123437744	sbi-r.1 for 8062849	sbi-r.1 for 8076055	sbi-r.1 for 8058540	bdi-r.1 for 100833620	bdi-r.1 for 100833312	bdi-r.1 for 100835722	cre-r.1 for CHLRE_16g656150v5

Ortholog

Ortholog ID: 944

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Major facilitator superfamily protein

tetracycline resistance protein, class E

hippocampus abundant transcript-like protein 1

tetracycline resistance protein, class A

hippocampus abundant transcript-like protein 1

hippocampus abundant transcript 1 protein

hippocampus abundant transcript-like protein 1

uncharacterized LOC102613590

uncharacterized LOC102622346

uncharacterized LOC102620188

hippocampus abundant transcript-like protein 1

uncharacterized LOC100260232

uncharacterized LOC100257341

uncharacterized LOC100252243

uncharacterized LOC7474984

uncharacterized LOC7477174

uncharacterized LOC7494001

hippocampus abundant transcript-like protein 1

uncharacterized LOC101267067

uncharacterized LOC101267718

hippocampus abundant transcript-like protein 1

uncharacterized LOC107800094

uncharacterized LOC107794205

uncharacterized LOC107791957

uncharacterized LOC4330257

uncharacterized LOC4349793

uncharacterized LOC9272544

uncharacterized LOC100272739

tetracycline transporter protein

uncharacterized LOC100277128

uncharacterized LOC123124560

hippocampus abundant transcript 1 protein

tetracycline resistance protein, class D

tetracycline resistance protein, class D-like

tetracycline resistance protein, class A-like

hippocampus abundant transcript 1 protein

tetracycline resistance protein, class H

tetracycline resistance protein, class A

tetracycline resistance protein, class H

hippocampus abundant transcript 1 protein

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00071	Fatty acid degradation	4
bra01212	Fatty acid metabolism	4
bra00240	Pyrimidine metabolism	3
bra00410	beta-Alanine metabolism	3
bra00770	Pantothenate and CoA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00270	Cysteine and methionine metabolism	2
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00290	Valine, leucine and isoleucine biosynthesis	2
ghi00770	Pantothenate and CoA biosynthesis	2
ghi00966	Glucosinolate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00592	alpha-Linolenic acid metabolism	2
ghi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00941	Flavonoid biosynthesis	4
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	4
vvi00710	Carbon fixation by Calvin cycle	3
vvi01240	Biosynthesis of cofactors	2
vvi00010	Glycolysis / Gluconeogenesis	2
vvi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00562	Inositol phosphate metabolism	2
mtr00564	Glycerophospholipid metabolism	2
mtr00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00052	Galactose metabolism	2
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00195	Photosynthesis	6
sly00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00999	Biosynthesis of various plant secondary metabolites	4
osa00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00460	Cyanoamino acid metabolism	2
zma00500	Starch and sucrose metabolism	2
zma00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	2
tae00600	Sphingolipid metabolism	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00460	Cyanoamino acid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00999	Biosynthesis of various plant secondary metabolites	3
tae00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00511	Other glycan degradation	2
tae00600	Sphingolipid metabolism	2
tae04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	3
cre01230	Biosynthesis of amino acids	2
cre01240	Biosynthesis of cofactors	2
cre00920	Sulfur metabolism	2
cre01320	Sulfur cycle	2

Expression

Expression pattern

Entrez Gene ID^*

816201

816202

103860499

103849042

103837786

106429568

107916544

107908637

107922177

102613590

102622346

102620188

100789302

100805770

100260232

100257341

100252243

7474984

7477174

7494001

25485646

11405374

11411764

101267067

101267718

102596965

102599762

107800094

107794205

107791957

4330257

4349793

9272544

100272739

100191596

100277128

123124560

123145050

123106818

123395308

123437744

8062849

8076055

8058540

100833620

100833312

100830230

5723454

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	2	3	3	1	3	3	2	3	3	2	3	3	3	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G16980 (ath-m.9 coexpression data)

Top 50 enrichment test to AT2G16980 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**