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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   COL3   CONSTANS-like 3 
 ath-u.5   COL3   CONSTANS-like 3 
 ath-r.7   COL3   CONSTANS-like 3 
 ath-e.2   COL3   CONSTANS-like 3 
 ath-m.4.bio   COL3   CONSTANS-like 3 
 ath-m.4.hor   COL3   CONSTANS-like 3 
 ath-m.4.lig   COL3   CONSTANS-like 3 
 ath-m.4.str   COL3   CONSTANS-like 3 
 ath-m.4.tis   COL3   CONSTANS-like 3 
 ath-u.5   COL5   CONSTANS-like 5 
 ath-u.5   COL2   CONSTANS-like 2 
 bra-r.6   103846378   zinc finger protein CONSTANS-LIKE 1 
 bra-r.6   103249145   zinc finger protein CONSTANS-LIKE 5 
 bna-r.1   125575402   zinc finger protein CONSTANS-LIKE 4-like 
 bna-r.1   111215057   zinc finger protein CONSTANS-LIKE 3 
 ghi-r.1   107926325   zinc finger protein CONSTANS-LIKE 5 
 ghi-r.1   107920546   zinc finger protein CONSTANS-LIKE 5-like 
 ghi-r.1   107916965   zinc finger protein CONSTANS-LIKE 2 
 cit-r.1   102620807   zinc finger protein CONSTANS-LIKE 5 
 cit-r.1   102610606   zinc finger protein CONSTANS-LIKE 4 
 cit-r.1   102610914   zinc finger protein CONSTANS-LIKE 2 
 gma-u.5   COL2B   zinc finger protein CONSTANS-LIKE 2 
 gma-u.5   COL2a   CONSTANS-like 2a 
 vvi-u.5   100248114   zinc finger protein CONSTANS-LIKE 2 
 vvi-u.5   100246796   zinc finger protein CONSTANS-LIKE 4 
 vvi-u.5   100244502   zinc finger protein CONSTANS-LIKE 5 
 ppo-u.5   7489120   zinc finger protein CONSTANS-LIKE 5 
 ppo-u.5   7465448   zinc finger protein CONSTANS-LIKE 4 
 ppo-u.5   18107444   zinc finger protein CONSTANS-LIKE 2 
 mtr-u.5   11425462   zinc finger protein CONSTANS-LIKE 5 
 mtr-u.5   25497637   zinc finger protein CONSTANS-LIKE 2 
 mtr-u.5   11431452   zinc finger protein CONSTANS-LIKE 4 
 sly-u.5   101268413   zinc finger protein CONSTANS-LIKE 4-like 
 sly-u.5   100191137   CONSTANS-like protein 
 sly-u.5   101254368   zinc finger protein CONSTANS-LIKE 4 
 sot-r.1   102582832   zinc finger protein CONSTANS-LIKE 5-like 
 sot-r.1   CO   CONSTANS 
 nta-r.1   107765723   zinc finger protein CONSTANS-LIKE 2-like 
 nta-r.1   107785832   zinc finger protein CONSTANS-LIKE 2 
 nta-r.1   107826614   zinc finger protein CONSTANS-LIKE 3 
 osa-u.5   4340746   zinc finger protein HD1-like 
 osa-u.5   4329950   zinc finger protein CONSTANS-LIKE 3 
 osa-u.5   4336288   zinc finger protein CONSTANS-LIKE 3 
 zma-u.5   103646270   zinc finger protein CONSTANS-LIKE 3 
 zma-u.5   109945560   zinc finger protein CONSTANS-LIKE 3 
 zma-u.5   103641806   zinc finger protein CONSTANS-LIKE 3 
 tae-r.2   123120799   zinc finger protein CO3 
 tae-r.2   123111537   zinc finger protein CO3 
 tae-r.2   123053778   zinc finger protein CONSTANS-LIKE 4 
 hvu-r.1   123427128   zinc finger protein CONSTANS-LIKE 5-like 
 hvu-r.1   123403770   zinc finger protein CONSTANS-LIKE 3-like 
 sbi-r.1   8060206   zinc finger protein CONSTANS-LIKE 4 
 sbi-r.1   8059668   zinc finger protein CONSTANS-LIKE 3 
 bdi-r.1   100825107   zinc finger protein HD1 
 bdi-r.1   100821263   zinc finger protein CONSTANS-LIKE 3 
 bdi-r.1   100834218   zinc finger protein CONSTANS-LIKE 3 
 cre-r.1   CHLRE_06g278159v5   uncharacterized protein 
 cre-r.1   CHLRE_12g534100v5   uncharacterized protein 

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Top 50 coexpressed genes to COL3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to COL3 (ath-m.9 coexpression data)

CoexMap"817016"


athCOL3 | Entrez gene ID : 817016      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 2 3 3 2 3 3 3 3 2 3 3 3 3 2 2 3 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010161 [list] [network] red light signaling pathway  (10 genes)  IMP  
GO:0010099 [list] [network] regulation of photomorphogenesis  (41 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0043565 [list] [network] sequence-specific DNA binding  (875 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_180052.1 [sequence] [blastp]
NP_973530.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 2,  cyto 1,  vacu 1  (predict for NP_180052.1)
chlo 5,  mito 1,  vacu 1,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  cyto_mito 1,  nucl_plas 1,  E.R._vacu 1,  cyto_plas 1  (predict for NP_973530.1)
Subcellular
localization
TargetP
scret 4,  other 3  (predict for NP_180052.1)
scret 4,  other 3  (predict for NP_973530.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
COL3
ath-u.5
for
COL3
ath-r.7
for
COL3
ath-e.2
for
COL3
ath-m.4.bio
for
COL3
ath-m.4.hor
for
COL3
ath-m.4.lig
for
COL3
ath-m.4.str
for
COL3
ath-m.4.tis
for
COL3
ath-u.5
for
COL5
ath-u.5
for
COL2
bra-r.6
for
103846378
bra-r.6
for
103249145
bna-r.1
for
125575402
bna-r.1
for
111215057
ghi-r.1
for
107926325
ghi-r.1
for
107920546
ghi-r.1
for
107916965
cit-r.1
for
102620807
cit-r.1
for
102610606
cit-r.1
for
102610914
gma-u.5
for
COL2B
gma-u.5
for
COL2a
vvi-u.5
for
100248114
vvi-u.5
for
100246796
vvi-u.5
for
100244502
ppo-u.5
for
7489120
ppo-u.5
for
7465448
ppo-u.5
for
18107444
mtr-u.5
for
11425462
mtr-u.5
for
25497637
mtr-u.5
for
11431452
sly-u.5
for
101268413
sly-u.5
for
100191137
sly-u.5
for
101254368
sot-r.1
for
102582832
sot-r.1
for
CO
nta-r.1
for
107765723
nta-r.1
for
107785832
nta-r.1
for
107826614
osa-u.5
for
4340746
osa-u.5
for
4329950
osa-u.5
for
4336288
zma-u.5
for
103646270
zma-u.5
for
109945560
zma-u.5
for
103641806
tae-r.2
for
123120799
tae-r.2
for
123111537
tae-r.2
for
123053778
hvu-r.1
for
123427128
hvu-r.1
for
123403770
sbi-r.1
for
8060206
sbi-r.1
for
8059668
bdi-r.1
for
100825107
bdi-r.1
for
100821263
bdi-r.1
for
100834218
cre-r.1
for
CHLRE_06g278159v5
cre-r.1
for
CHLRE_12g534100v5


Ortholog ID: 543
Species ath ath ath bra bra bna ghi ghi ghi cit cit cit gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae hvu sbi sbi bdi bdi bdi cre cre
Symbol COL5 COL2 COL4 LOC103864587 LOC103851008 LOC106391078 LOC107926325 LOC107931695 LOC107945774 LOC102620807 LOC102610606 LOC102610914 COL2a COL8 LOC100248114 LOC100246796 LOC100244502 LOC7489120 LOC18107444 LOC7468389 LOC25497637 LOC11431452 LOC11431470 LOC100191137 LOC101246004 CO1 LOC102582832 CO LOC102578495 LOC107785832 LOC107799876 LOC107814243 LOC4340746 LOC4336288 LOC4346474 LOC103646270 LOC100281289 LOC100147736 LOC123045911 LOC123427128 LOC8060206 LOC8059668 LOC100825107 LOC100821263 LOC100830296 CHLRE_06g278159v5 CHLRE_12g534100v5
Function* CONSTANS-like 5 CONSTANS-like 2 zinc finger CONSTANS-like protein zinc finger protein CONSTANS-LIKE 3 zinc finger protein CONSTANS-LIKE 1 zinc finger protein CONSTANS-LIKE 3 zinc finger protein CONSTANS-LIKE 5 zinc finger protein CONSTANS-LIKE 5 zinc finger protein CONSTANS-LIKE 2 zinc finger protein CONSTANS-LIKE 5 zinc finger protein CONSTANS-LIKE 4 zinc finger protein CONSTANS-LIKE 2 CONSTANS-like 2a zinc finger protein CONSTANS-LIKE 5-like zinc finger protein CONSTANS-LIKE 2 zinc finger protein CONSTANS-LIKE 4 zinc finger protein CONSTANS-LIKE 5 zinc finger protein CONSTANS-LIKE 5 zinc finger protein CONSTANS-LIKE 2 zinc finger protein CONSTANS-LIKE 2 zinc finger protein CONSTANS-LIKE 2 zinc finger protein CONSTANS-LIKE 4 zinc finger protein CONSTANS-LIKE 4 CONSTANS-like protein CONSTANS 2 CONSTANS 1 zinc finger protein CONSTANS-LIKE 5-like CONSTANS zinc finger protein CONSTANS-LIKE 4-like zinc finger protein CONSTANS-LIKE 2 zinc finger protein CONSTANS-LIKE 3-like zinc finger protein CONSTANS-LIKE 3-like zinc finger protein HD1-like zinc finger protein CONSTANS-LIKE 3 zinc finger protein CO3-like zinc finger protein CONSTANS-LIKE 3 Col3 uncharacterized LOC100147736 zinc finger protein CONSTANS-LIKE 4 zinc finger protein CONSTANS-LIKE 5-like zinc finger protein CONSTANS-LIKE 4 zinc finger protein CONSTANS-LIKE 3 zinc finger protein HD1 zinc finger protein CONSTANS-LIKE 3 zinc finger protein HD1 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 3
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 3
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04081 Hormone signaling 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 4
mtr04712 Circadian rhythm - plant 3
mtr00630 Glyoxylate and dicarboxylate metabolism 2
mtr01200 Carbon metabolism 2
mtr04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
sly00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
nta04517 IgSF CAM signaling 2
nta04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00330 Arginine and proline metabolism 2
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 3
zma00061 Fatty acid biosynthesis 2
zma01040 Biosynthesis of unsaturated fatty acids 2
zma01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835872 821298 832563 103864587 103851008 106391078 107926325 107931695 107945774 102620807 102610606 102610914 100301885 100805693 100248114 100246796 100244502 7489120 18107444 7468389 25497637 11431452 11431470 100191137 101246004 778253 102582832 102577671 102578495 107785832 107799876 107814243 4340746 4336288 4346474 103646270 100281289 100147736 123045911 123427128 8060206 8059668 100825107 100821263 100830296 5723575 66055662
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