ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-r.7	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-e.2	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.bio	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.hor	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.lig	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.str	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-m.4.tis	AT2G40700	P-loop containing nucleoside triphosphate hydrolases superfamily protein
bra-r.6	103866515	DEAD-box ATP-dependent RNA helicase 17
bna-r.1	106396607	DEAD-box ATP-dependent RNA helicase 17
bna-r.1	106450691	DEAD-box ATP-dependent RNA helicase 17
ghi-r.1	107931592	DEAD-box ATP-dependent RNA helicase 17
ghi-r.1	107962229	DEAD-box ATP-dependent RNA helicase 17
cit-r.1	102609227	DEAD-box ATP-dependent RNA helicase 17
gma-u.5	100805157	DEAD-box ATP-dependent RNA helicase 17
vvi-u.5	100250946	DEAD-box ATP-dependent RNA helicase 17
ppo-u.5	7459243	DEAD-box ATP-dependent RNA helicase 17
mtr-u.5	25486540	DEAD-box ATP-dependent RNA helicase 17
mtr-u.5	11413589	DEAD-box ATP-dependent RNA helicase 17
sly-u.5	101245966	DEAD-box ATP-dependent RNA helicase 17
sot-r.1	102593698	DEAD-box ATP-dependent RNA helicase 17
nta-r.1	107831279	DEAD-box ATP-dependent RNA helicase 17
nta-r.1	107790428	DEAD-box ATP-dependent RNA helicase 17-like
osa-u.5	4337589	DEAD-box ATP-dependent RNA helicase 17-like
zma-u.5	100382837	uncharacterized LOC100382837
tae-r.2	123179957	DEAD-box ATP-dependent RNA helicase 17
tae-r.2	123104225	DEAD-box ATP-dependent RNA helicase 17
tae-r.2	123186739	DEAD-box ATP-dependent RNA helicase 17
hvu-r.1	123441665	DEAD-box ATP-dependent RNA helicase 17
sbi-r.1	8077129	DEAD-box ATP-dependent RNA helicase 17
bdi-r.1	100824689	DEAD-box ATP-dependent RNA helicase 17
cre-r.1	CHLRE_03g188550v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0009651 [list] [network] response to salt stress

(473 genes)

IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0003724 [list] [network] RNA helicase activity

(42 genes)

IEA

Protein

NP_181602.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, chlo 1, nucl 1

(predict for NP_181602.2)

Subcellular
localization
TargetP

other 3, mito 3

(predict for NP_181602.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT2G40700	ath-u.5 for AT2G40700	ath-r.7 for AT2G40700	ath-e.2 for AT2G40700	ath-m.4.bio for AT2G40700	ath-m.4.hor for AT2G40700	ath-m.4.lig for AT2G40700	ath-m.4.str for AT2G40700	ath-m.4.tis for AT2G40700	bra-r.6 for 103866515	bna-r.1 for 106396607	bna-r.1 for 106450691	ghi-r.1 for 107931592	ghi-r.1 for 107962229	cit-r.1 for 102609227	gma-u.5 for 100805157	vvi-u.5 for 100250946	ppo-u.5 for 7459243	mtr-u.5 for 25486540	mtr-u.5 for 11413589	sly-u.5 for 101245966	sot-r.1 for 102593698	nta-r.1 for 107831279	nta-r.1 for 107790428	osa-u.5 for 4337589	zma-u.5 for 100382837	tae-r.2 for 123179957	tae-r.2 for 123104225	tae-r.2 for 123186739	hvu-r.1 for 123441665	sbi-r.1 for 8077129	bdi-r.1 for 100824689	cre-r.1 for CHLRE_03g188550v5

Ortholog

Ortholog ID: 10037

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

P-loop containing nucleoside triphosphate hydrolases superfamily protein

DEAD-box ATP-dependent RNA helicase 17

DEAD-box ATP-dependent RNA helicase 17-like

uncharacterized LOC100382837

DEAD-box ATP-dependent RNA helicase 17

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	5
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03040	Spliceosome	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	3
sly03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	3
nta00740	Riboflavin metabolism	3
nta01240	Biosynthesis of cofactors	3
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	3

Expression

Expression pattern

Entrez Gene ID^*

818665

103866515

106396607

106450691

107931592

107962229

102609227

100805157

100250946

7459243

25486540

11413589

101245966

102593698

107831279

107790428

4337589

100382837

123179957

123104225

123186739

123441665

8077129

100824689

5717487

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT2G40700 (ath-m.9 coexpression data)

Top 50 enrichment test to AT2G40700 (ath-m.9 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	2	2	1	1	1	1	2	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G40700 (ath-m.9 coexpression data)

Top 50 enrichment test to AT2G40700 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**