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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   ARP   apurinic endonuclease-redox protein 
 ath-u.5   ARP   apurinic endonuclease-redox protein 
 ath-r.7   ARP   apurinic endonuclease-redox protein 
 ath-e.2   ARP   apurinic endonuclease-redox protein 
 ath-m.4.bio   ARP   apurinic endonuclease-redox protein 
 ath-m.4.hor   ARP   apurinic endonuclease-redox protein 
 ath-m.4.lig   ARP   apurinic endonuclease-redox protein 
 ath-m.4.str   ARP   apurinic endonuclease-redox protein 
 ath-m.4.tis   ARP   apurinic endonuclease-redox protein 
 bra-r.6   103860053   DNA-(apurinic or apyrimidinic site) lyase, chloroplastic 
 bra-r.6   103866025   DNA-(apurinic or apyrimidinic site) lyase, chloroplastic 
 bna-r.1   106391665   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like 
 bna-r.1   106447548   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 ghi-r.1   107951865   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 ghi-r.1   107950700   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 cit-r.1   102617923   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 gma-u.5   100776653   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 vvi-u.5   100257338   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 ppo-u.5   7458951   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 mtr-u.5   25483315   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 sly-u.5   101255875   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 sot-r.1   102598756   DNA-(apurinic or apyrimidinic site) lyase, chloroplastic 
 nta-r.1   107801612   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 nta-r.1   107777923   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like 
 osa-u.5   4327960   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 osa-u.5   4327961   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 zma-u.5   100191243   uncharacterized LOC100191243 
 zma-u.5   100280514   uncharacterized LOC100280514 
 tae-r.2   123079451   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 tae-r.2   123079450   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 tae-r.2   123071085   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic 
 hvu-r.1   123444621   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like 
 hvu-r.1   123440381   DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like 
 sbi-r.1   8055254   DNA-(apurinic or apyrimidinic site) lyase, chloroplastic 
 bdi-r.1   100837972   DNA-(apurinic or apyrimidinic site) lyase, chloroplastic 
 bdi-r.1   100838455   DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like 
 cre-r.1   CHLRE_03g175850v5   uncharacterized protein 

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Top 50 coexpressed genes to ARP (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ARP (ath-m.9 coexpression data)

CoexMap"818744"


athARP | Entrez gene ID : 818744      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 2 2 1 1 1 1 1 1 1 2 2 2 3 2 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03410 [list] [network] Base excision repair (50 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (18 genes)  IDA  
GO:0006281 [list] [network] DNA repair  (203 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  TAS  
GO CC
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004528 [list] [network] phosphodiesterase I activity  (1 genes)  IDA  
GO:0003906 [list] [network] DNA-(apurinic or apyrimidinic site) endonuclease activity  (5 genes)  IDA  
GO:0008408 [list] [network] 3'-5' exonuclease activity  (24 genes)  IDA  
GO:0016791 [list] [network] phosphatase activity  (199 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001118500.1 [sequence] [blastp]
NP_001323447.1 [sequence] [blastp]
NP_001323448.1 [sequence] [blastp]
NP_181677.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for NP_001118500.1)
chlo 8,  nucl 1  (predict for NP_001323447.1)
nucl 6,  cyto_nucl 4,  mito 1,  plas 1,  chlo_mito 1,  golg_plas 1  (predict for NP_001323448.1)
chlo 8,  nucl 1,  plas 1,  vacu 1,  nucl_plas 1  (predict for NP_181677.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_001118500.1)
chlo 4  (predict for NP_001323447.1)
other 7  (predict for NP_001323448.1)
mito 3  (predict for NP_181677.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
ARP
ath-u.5
for
ARP
ath-r.7
for
ARP
ath-e.2
for
ARP
ath-m.4.bio
for
ARP
ath-m.4.hor
for
ARP
ath-m.4.lig
for
ARP
ath-m.4.str
for
ARP
ath-m.4.tis
for
ARP
bra-r.6
for
103860053
bra-r.6
for
103866025
bna-r.1
for
106391665
bna-r.1
for
106447548
ghi-r.1
for
107951865
ghi-r.1
for
107950700
cit-r.1
for
102617923
gma-u.5
for
100776653
vvi-u.5
for
100257338
ppo-u.5
for
7458951
mtr-u.5
for
25483315
sly-u.5
for
101255875
sot-r.1
for
102598756
nta-r.1
for
107801612
nta-r.1
for
107777923
osa-u.5
for
4327960
osa-u.5
for
4327961
zma-u.5
for
100191243
zma-u.5
for
100280514
tae-r.2
for
123079451
tae-r.2
for
123079450
tae-r.2
for
123071085
hvu-r.1
for
123444621
hvu-r.1
for
123440381
sbi-r.1
for
8055254
bdi-r.1
for
100837972
bdi-r.1
for
100838455
cre-r.1
for
CHLRE_03g175850v5


Ortholog ID: 5487
Species ath bra bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa osa zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol ARP LOC103860053 LOC103866025 LOC106391665 LOC106437988 LOC107951865 LOC107950700 LOC102617923 LOC100776653 LOC100257338 LOC7458951 LOC25483315 LOC101255875 LOC102598756 LOC107801612 LOC107777923 LOC4327960 LOC4327961 LOC100191243 LOC100280514 LOC123079451 LOC123079450 LOC123062317 LOC123444621 LOC123440381 LOC8055254 LOC100837972 LOC100838455 CHLRE_03g175850v5
Function* apurinic endonuclease-redox protein DNA-(apurinic or apyrimidinic site) lyase, chloroplastic DNA-(apurinic or apyrimidinic site) lyase, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) lyase, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic uncharacterized LOC100191243 uncharacterized LOC100280514 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic-like DNA-(apurinic or apyrimidinic site) lyase, chloroplastic DNA-(apurinic or apyrimidinic site) lyase, chloroplastic DNA-(apurinic or apyrimidinic site) lyase, chloroplastic-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 7
ath03030 DNA replication 6
ath03420 Nucleotide excision repair 6
ath03430 Mismatch repair 6
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 2
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00760 Nicotinate and nicotinamide metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03015 mRNA surveillance pathway 3
gma00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
vvi04136 Autophagy - other 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 3
nta03410 Base excision repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 2
cre03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818744 103860053 103866025 106391665 106437988 107951865 107950700 102617923 100776653 100257338 7458951 25483315 101255875 102598756 107801612 107777923 4327960 4327961 100191243 100280514 123079451 123079450 123062317 123444621 123440381 8055254 100837972 100838455 5728858
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