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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   UPB1   transcription factor UPBEAT protein 
 ath-u.5   UPB1   transcription factor UPBEAT protein 
 ath-r.7   UPB1   transcription factor UPBEAT protein 
 ath-e.2   UPB1   transcription factor UPBEAT protein 
 ath-m.4.bio   UPB1   transcription factor UPBEAT protein 
 ath-m.4.hor   UPB1   transcription factor UPBEAT protein 
 ath-m.4.lig   UPB1   transcription factor UPBEAT protein 
 ath-m.4.str   UPB1   transcription factor UPBEAT protein 
 ath-m.4.tis   UPB1   transcription factor UPBEAT protein 
 bra-r.6   103852640   uncharacterized LOC103852640 
 bna-r.1   106454406   transcription factor UPBEAT1-like 
 ghi-r.1   107886604   transcription factor PAR1 
 cit-r.1   102615740   transcription factor IBH1-like 
 vvi-u.5   100855136   transcription factor UPBEAT1 
 osa-u.5   4345571   transcription factor IBH1-like 
 zma-u.5   100381914   uncharacterized LOC100381914 
 zma-u.5   100277208   uncharacterized LOC100277208 
 zma-u.5   100275319   uncharacterized LOC100275319 
 tae-r.2   123107007   transcription factor bHLH150 
 tae-r.2   123124843   uncharacterized LOC123124843 
 hvu-r.1   123398258   uncharacterized LOC123398258 
 sbi-r.1   8056003   uncharacterized LOC8056003 

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Top 50 coexpressed genes to UPB1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UPB1 (ath-m.9 coexpression data)

CoexMap"819340"


athUPB1 | Entrez gene ID : 819340      
Species ath bra bna ghi cit vvi osa zma tae hvu sbi sot bdi sly nta ppo cre mtr gma
Paralog 9 1 1 1 1 1 1 3 2 1 1 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009646 [list] [network] response to absence of light  (58 genes)  IDA  
GO:2000280 [list] [network] regulation of root development  (79 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_566098.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  extr 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_566098.1)
Subcellular
localization
TargetP
chlo 5,  mito 4  (predict for NP_566098.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
UPB1
ath-u.5
for
UPB1
ath-r.7
for
UPB1
ath-e.2
for
UPB1
ath-m.4.bio
for
UPB1
ath-m.4.hor
for
UPB1
ath-m.4.lig
for
UPB1
ath-m.4.str
for
UPB1
ath-m.4.tis
for
UPB1
bra-r.6
for
103852640
bna-r.1
for
106454406
ghi-r.1
for
107886604
cit-r.1
for
102615740
vvi-u.5
for
100855136
osa-u.5
for
4345571
zma-u.5
for
100381914
zma-u.5
for
100277208
zma-u.5
for
100275319
tae-r.2
for
123107007
tae-r.2
for
123124843
hvu-r.1
for
123398258
sbi-r.1
for
8056003


Ortholog ID: 3788
Species ath bra bra bna ghi cit vvi osa zma zma zma tae tae hvu sbi
Symbol UPB1 LOC103852640 LOC103866390 LOC106394886 LOC107886604 LOC102615740 LOC100855136 LOC4345571 LOC100381914 LOC100277208 LOC100275319 LOC123124755 LOC123116126 LOC123398258 LOC8056003
Function* transcription factor UPBEAT protein uncharacterized LOC103852640 transcription factor UPBEAT1 transcription factor UPBEAT1 transcription factor PAR1 transcription factor IBH1-like transcription factor UPBEAT1 transcription factor IBH1-like uncharacterized LOC100381914 uncharacterized LOC100277208 uncharacterized LOC100275319 transcription factor bHLH150 transcription factor bHLH150 uncharacterized LOC123398258 uncharacterized LOC8056003
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 5
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 2
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00460 Cyanoamino acid metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 3
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00270 Cysteine and methionine metabolism 2
hvu00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819340 103852640 103866390 106394886 107886604 102615740 100855136 4345571 100381914 100277208 100275319 123124755 123116126 123398258 8056003
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