ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT2G47820	arginine-glutamic acid dipeptide repeat protein
ath-u.5	AT2G47820	arginine-glutamic acid dipeptide repeat protein
ath-r.7	AT2G47820	arginine-glutamic acid dipeptide repeat protein
ath-e.2	AT2G47820	arginine-glutamic acid dipeptide repeat protein
ath-m.4.bio	AT2G47820	arginine-glutamic acid dipeptide repeat protein
ath-m.4.hor	AT2G47820	arginine-glutamic acid dipeptide repeat protein
ath-m.4.lig	AT2G47820	arginine-glutamic acid dipeptide repeat protein
ath-m.4.str	AT2G47820	arginine-glutamic acid dipeptide repeat protein
ath-m.4.tis	AT2G47820	arginine-glutamic acid dipeptide repeat protein
bra-r.6	103858259	uncharacterized LOC103858259
bna-r.1	111214058	uncharacterized LOC111214058
bna-r.1	106438363	uncharacterized LOC106438363
ghi-r.1	107908673	uncharacterized LOC107908673
ghi-r.1	107910806	uncharacterized LOC107910806
ghi-r.1	107899093	uncharacterized LOC107899093
cit-r.1	102612976	uncharacterized LOC102612976
cit-r.1	102624452	uncharacterized LOC102624452
cit-r.1	102629830	uncharacterized LOC102629830
gma-u.5	102661068	uncharacterized LOC102661068
gma-u.5	102661961	uncharacterized LOC102661961
vvi-u.5	104879764	uncharacterized LOC104879764
vvi-u.5	100254594	uncharacterized LOC100254594
vvi-u.5	100245979	uncharacterized LOC100245979
ppo-u.5	18098688	uncharacterized LOC18098688
ppo-u.5	18110907	uncharacterized LOC18110907
ppo-u.5	7481747	uncharacterized LOC7481747
mtr-u.5	11442030	uncharacterized LOC11442030
mtr-u.5	11429776	uncharacterized LOC11429776
sly-u.5	101254833	uncharacterized LOC101254833
sot-r.1	102604919	uncharacterized LOC102604919
nta-r.1	107774544	uncharacterized LOC107774544
nta-r.1	107761674	uncharacterized LOC107761674
osa-u.5	4343640	uncharacterized LOC4343640
osa-u.5	4332820	uncharacterized LOC4332820
zma-u.5	100381518	uncharacterized LOC100381518
zma-u.5	100279470	uncharacterized LOC100279470
zma-u.5	103634765	uncharacterized LOC103634765
tae-r.2	123097484	uncharacterized LOC123097484
tae-r.2	123052370	uncharacterized LOC123052370
tae-r.2	123085836	uncharacterized LOC123085836
hvu-r.1	123425653	uncharacterized LOC123425653
hvu-r.1	123409883	uncharacterized LOC123409883
hvu-r.1	123448654	uncharacterized LOC123448654
sbi-r.1	8081767	uncharacterized LOC8081767
sbi-r.1	8082297	uncharacterized LOC8082297
bdi-r.1	100836195	uncharacterized LOC100836195
bdi-r.1	100831208	uncharacterized LOC100831208
bdi-r.1	100828743	uncharacterized LOC100828743

Top 50 coexpressed genes to AT2G47820 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G47820 (ath-m.9 coexpression data)

CoexMap"819394"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0000118 [list] [network] histone deacetylase complex	(44 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_001189773.1 [sequence] [blastp]
NP_182303.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_001189773.1)
nucl 9	(predict for NP_182303.2)

Subcellular
localization
TargetP

other 9	(predict for NP_001189773.1)
other 9	(predict for NP_182303.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT2G47820	ath-u.5 for AT2G47820	ath-r.7 for AT2G47820	ath-e.2 for AT2G47820	ath-m.4.bio for AT2G47820	ath-m.4.hor for AT2G47820	ath-m.4.lig for AT2G47820	ath-m.4.str for AT2G47820	ath-m.4.tis for AT2G47820	bra-r.6 for 103858259	bna-r.1 for 111214058	bna-r.1 for 106438363	ghi-r.1 for 107908673	ghi-r.1 for 107910806	ghi-r.1 for 107899093	cit-r.1 for 102612976	cit-r.1 for 102624452	cit-r.1 for 102629830	gma-u.5 for 102661068	gma-u.5 for 102661961	vvi-u.5 for 104879764	vvi-u.5 for 100254594	vvi-u.5 for 100245979	ppo-u.5 for 18098688	ppo-u.5 for 18110907	ppo-u.5 for 7481747	mtr-u.5 for 11442030	mtr-u.5 for 11429776	sly-u.5 for 101254833	sot-r.1 for 102604919	nta-r.1 for 107774544	nta-r.1 for 107761674	osa-u.5 for 4343640	osa-u.5 for 4332820	zma-u.5 for 100381518	zma-u.5 for 100279470	zma-u.5 for 103634765	tae-r.2 for 123097484	tae-r.2 for 123052370	tae-r.2 for 123085836	hvu-r.1 for 123425653	hvu-r.1 for 123409883	hvu-r.1 for 123448654	sbi-r.1 for 8081767	sbi-r.1 for 8082297	bdi-r.1 for 100836195	bdi-r.1 for 100831208	bdi-r.1 for 100828743

Ortholog

Ortholog ID: 1969

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

arginine-glutamic acid dipeptide repeat protein

uncharacterized LOC103858259

uncharacterized LOC111214058

uncharacterized LOC106438363

uncharacterized LOC107908673

uncharacterized LOC107910806

uncharacterized LOC107893648

uncharacterized LOC102612976

uncharacterized LOC102624452

uncharacterized LOC102629830

uncharacterized LOC102661961

uncharacterized LOC100807168

uncharacterized LOC104879764

uncharacterized LOC100254594

uncharacterized LOC100245979

uncharacterized LOC18098688

uncharacterized LOC18110907

uncharacterized LOC7481747

uncharacterized LOC11442030

uncharacterized LOC101254833

uncharacterized LOC102604919

uncharacterized LOC107774544

uncharacterized LOC107761674

uncharacterized LOC4343640

uncharacterized LOC4332820

uncharacterized LOC100381518

uncharacterized LOC100279470

uncharacterized LOC103634765

uncharacterized LOC123085836

uncharacterized LOC123091973

uncharacterized LOC123091983

uncharacterized LOC123425653

uncharacterized LOC123448654

uncharacterized LOC123448652

uncharacterized LOC8081767

uncharacterized LOC8082297

uncharacterized LOC100836195

uncharacterized LOC100828743

uncharacterized LOC100839331

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00562	Inositol phosphate metabolism	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00561	Glycerolipid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo00300	Lysine biosynthesis	2
ppo01230	Biosynthesis of amino acids	2
ppo03030	DNA replication	2
ppo03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	4
sly04626	Plant-pathogen interaction	3
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00561	Glycerolipid metabolism	2
bdi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03030	DNA replication	2
bdi03420	Nucleotide excision repair	2
bdi03430	Mismatch repair	2
bdi03440	Homologous recombination	2

Expression

Expression pattern

Entrez Gene ID^*

819394

103858259

111214058

106438363

107908673

107910806

107893648

102612976

102624452

102629830

102661961

100807168

104879764

100254594

100245979

18098688

18110907

7481747

11442030

101254833

102604919

107774544

107761674

4343640

4332820

100381518

100279470

103634765

123085836

123091973

123091983

123425653

123448654

123448652

8081767

8082297

100836195

100828743

100839331

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	2	3	3	2	3	3	2	1	1	2	2	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G47820 (ath-m.9 coexpression data)

Top 50 enrichment test to AT2G47820 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**