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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   ERCC1   nucleotide repair protein 
 ath-u.5   ERCC1   nucleotide repair protein 
 ath-r.7   ERCC1   nucleotide repair protein 
 ath-e.2   ERCC1   nucleotide repair protein 
 ath-m.4.bio   ERCC1   nucleotide repair protein 
 ath-m.4.hor   ERCC1   nucleotide repair protein 
 ath-m.4.lig   ERCC1   nucleotide repair protein 
 ath-m.4.str   ERCC1   nucleotide repair protein 
 ath-m.4.tis   ERCC1   nucleotide repair protein 
 bra-r.6   103870844   DNA excision repair protein ERCC-1 
 bna-r.1   106453031   DNA excision repair protein ERCC-1 
 bna-r.1   125587973   DNA excision repair protein ERCC-1-like 
 ghi-r.1   107889799   DNA excision repair protein ERCC-1 
 ghi-r.1   107893275   DNA excision repair protein ERCC-1 
 cit-r.1   102623615   DNA excision repair protein ERCC-1 
 gma-u.5   100777022   DNA excision repair protein ERCC-1 
 vvi-u.5   100244316   DNA excision repair protein ERCC-1 
 ppo-u.5   18098811   DNA excision repair protein ERCC-1 
 mtr-u.5   11412075   DNA excision repair protein ERCC-1 
 sly-u.5   101261110   DNA excision repair protein ERCC-1 
 sot-r.1   102603702   DNA excision repair protein ERCC-1 
 nta-r.1   107787358   DNA excision repair protein ERCC-1 
 nta-r.1   107776580   DNA excision repair protein ERCC-1 
 osa-u.5   4349131   DNA excision repair protein ERCC-1 
 zma-u.5   100192592   DNA excision repair protein ERCC-1 
 tae-r.2   123124394   DNA excision repair protein ERCC-1 
 tae-r.2   123181345   DNA excision repair protein ERCC-1 
 tae-r.2   123048899   DNA excision repair protein ERCC-1 
 hvu-r.1   123434772   DNA excision repair protein ERCC-1 
 sbi-r.1   8065686   DNA excision repair protein ERCC-1 
 bdi-r.1   100833808   DNA excision repair protein ERCC-1 
 cre-r.1   CHLRE_03g196651v5   uncharacterized protein 

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Top 50 coexpressed genes to ERCC1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ERCC1 (ath-m.9 coexpression data)

CoexMap"819685"


athERCC1 | Entrez gene ID : 819685      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03420 [list] [network] Nucleotide excision repair (85 genes)
ath03460 [list] [network] Fanconi anemia pathway (46 genes)
GO BP
GO:0006294 [list] [network] nucleotide-excision repair, preincision complex assembly  (1 genes)  IMP  
GO:0010213 [list] [network] non-photoreactive DNA repair  (2 genes)  IMP  
GO:0010332 [list] [network] response to gamma radiation  (14 genes)  IMP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (43 genes)  IMP  
GO:0010224 [list] [network] response to UV-B  (85 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0017108 [list] [network] 5'-flap endonuclease activity  (5 genes)  IMP  
GO:0003684 [list] [network] damaged DNA binding  (10 genes)  IEA  
Protein NP_001327616.1 [sequence] [blastp]
NP_187172.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  chlo 1,  vacu 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001327616.1)
nucl 9  (predict for NP_187172.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001327616.1)
other 9  (predict for NP_187172.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
ERCC1
ath-u.5
for
ERCC1
ath-r.7
for
ERCC1
ath-e.2
for
ERCC1
ath-m.4.bio
for
ERCC1
ath-m.4.hor
for
ERCC1
ath-m.4.lig
for
ERCC1
ath-m.4.str
for
ERCC1
ath-m.4.tis
for
ERCC1
bra-r.6
for
103870844
bna-r.1
for
106453031
bna-r.1
for
125587973
ghi-r.1
for
107889799
ghi-r.1
for
107893275
cit-r.1
for
102623615
gma-u.5
for
100777022
vvi-u.5
for
100244316
ppo-u.5
for
18098811
mtr-u.5
for
11412075
sly-u.5
for
101261110
sot-r.1
for
102603702
nta-r.1
for
107787358
nta-r.1
for
107776580
osa-u.5
for
4349131
zma-u.5
for
100192592
tae-r.2
for
123124394
tae-r.2
for
123181345
tae-r.2
for
123048899
hvu-r.1
for
123434772
sbi-r.1
for
8065686
bdi-r.1
for
100833808
cre-r.1
for
CHLRE_03g196651v5


Ortholog ID: 10063
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol ERCC1 LOC103870844 LOC106453031 LOC125587973 LOC107889799 LOC107893275 LOC102623615 LOC100777022 LOC100244316 LOC18098811 LOC11412075 LOC101261110 LOC102603702 LOC107787358 LOC107776580 LOC4349131 LOC100192592 LOC123124394 LOC123181345 LOC123048899 LOC123434772 LOC8065686 LOC100833808 CHLRE_03g196651v5
Function* nucleotide repair protein DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1-like DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 DNA excision repair protein ERCC-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 2
bna03460 Fanconi anemia pathway 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna03420 Nucleotide excision repair 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03008 Ribosome biogenesis in eukaryotes 5
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta03420 Nucleotide excision repair 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03420 Nucleotide excision repair 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03420 Nucleotide excision repair 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
tae03082 ATP-dependent chromatin remodeling 3
tae03420 Nucleotide excision repair 3
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819685 103870844 106453031 125587973 107889799 107893275 102623615 100777022 100244316 18098811 11412075 101261110 102603702 107787358 107776580 4349131 100192592 123124394 123181345 123048899 123434772 8065686 100833808 5718766
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