ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-u.5	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-r.7	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-e.2	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-m.4.bio	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-m.4.hor	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-m.4.lig	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-m.4.str	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-m.4.tis	EML1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-u.5	EML4	Emsy N Terminus (ENT) domain-containing protein
ath-u.5	EML2	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
ath-u.5	EML3	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
bra-r.6	103858133	protein EMSY-LIKE 4
bra-r.6	103859430	protein EMSY-LIKE 1
bra-r.6	103855992	protein EMSY-LIKE 3
bna-r.1	106401695	protein EMSY-LIKE 1
bna-r.1	106419084	protein EMSY-LIKE 2
bna-r.1	106438222	protein EMSY-LIKE 4-like
ghi-r.1	107899744	protein EMSY-LIKE 1
ghi-r.1	107906749	protein EMSY-LIKE 3
ghi-r.1	107948276	protein EMSY-LIKE 1
cit-r.1	102626711	protein EMSY-LIKE 3
cit-r.1	102607702	hypothetical protein
cit-r.1	102616204	protein EMSY-LIKE 3-like
gma-u.5	100790519	protein EMSY-LIKE 3
gma-u.5	100780512	protein EMSY-LIKE 3
vvi-u.5	100853402	protein EMSY-LIKE 4
vvi-u.5	100253804	protein EMSY-LIKE 3
vvi-u.5	100263217	protein EMSY-LIKE 3
ppo-u.5	18094984	protein EMSY-LIKE 3
ppo-u.5	18100588	protein EMSY-LIKE 1
ppo-u.5	18106147	protein EMSY-LIKE 2
mtr-u.5	11414313	protein EMSY-LIKE 3
mtr-u.5	11446706	protein EMSY-LIKE 3
sly-u.5	101252218	protein EMSY-LIKE 3
sly-u.5	101055531	Hop-interacting protein THI115
sly-u.5	101251479	protein EMSY-LIKE 3-like
sot-r.1	102589936	protein EMSY-LIKE 3-like
sot-r.1	102591642	protein EMSY-LIKE 3-like
nta-r.1	107767252	protein EMSY-LIKE 3
nta-r.1	107794838	protein EMSY-LIKE 3
nta-r.1	107794888	protein EMSY-LIKE 3
osa-u.5	4346001	protein EMSY-LIKE 3
osa-u.5	4346600	protein EMSY-LIKE 3
osa-u.5	4345288	protein EMSY-LIKE 3
zma-u.5	100276211	uncharacterized LOC100276211
zma-u.5	100284072	ENT domain containing protein
zma-u.5	100284576	ENT domain containing protein
tae-r.2	123121934	protein EMSY-LIKE 3
tae-r.2	123120969	protein EMSY-LIKE 3
tae-r.2	123103404	protein EMSY-LIKE 3
hvu-r.1	123399416	protein EMSY-LIKE 3-like
hvu-r.1	123451761	protein EMSY-LIKE 3-like
sbi-r.1	8069905	protein EMSY-LIKE 3
sbi-r.1	8062031	protein EMSY-LIKE 3
sbi-r.1	8063462	protein EMSY-LIKE 3
bdi-r.1	100837286	protein EMSY-LIKE 3
bdi-r.1	100836980	protein EMSY-LIKE 3
bdi-r.1	100824948	protein EMSY-LIKE 3
cre-r.1	CHLRE_05g237350v5	uncharacterized protein

Top 50 coexpressed genes to EML1 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to EML1 (ath-m.9 coexpression data)

CoexMap"820389"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem	(186 genes)	IMP
GO:0050832 [list] [network] defense response to fungus	(282 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA

GO MF

GO:0003682 [list] [network] chromatin binding	(103 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001030677.1 [sequence] [blastp]
NP_187821.1 [sequence] [blastp]
NP_850568.1 [sequence] [blastp]

Subcellular
localization
wolf

golg 3, nucl 2, cyto 2, cyto_nucl 2	(predict for NP_001030677.1)
nucl 4, cysk 4, cysk_nucl 4	(predict for NP_187821.1)
nucl 4, cysk 4, cysk_nucl 4	(predict for NP_850568.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001030677.1)
other 7	(predict for NP_187821.1)
other 7	(predict for NP_850568.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for EML1	ath-u.5 for EML1	ath-r.7 for EML1	ath-e.2 for EML1	ath-m.4.bio for EML1	ath-m.4.hor for EML1	ath-m.4.lig for EML1	ath-m.4.str for EML1	ath-m.4.tis for EML1	ath-u.5 for EML4	ath-u.5 for EML2	ath-u.5 for EML3	bra-r.6 for 103858133	bra-r.6 for 103859430	bra-r.6 for 103855992	bna-r.1 for 106401695	bna-r.1 for 106419084	bna-r.1 for 106438222	ghi-r.1 for 107899744	ghi-r.1 for 107906749	ghi-r.1 for 107948276	cit-r.1 for 102626711	cit-r.1 for 102607702	cit-r.1 for 102616204	gma-u.5 for 100790519	gma-u.5 for 100780512	vvi-u.5 for 100853402	vvi-u.5 for 100253804	vvi-u.5 for 100263217	ppo-u.5 for 18094984	ppo-u.5 for 18100588	ppo-u.5 for 18106147	mtr-u.5 for 11414313	mtr-u.5 for 11446706	sly-u.5 for 101252218	sly-u.5 for 101055531	sly-u.5 for 101251479	sot-r.1 for 102589936	sot-r.1 for 102591642	nta-r.1 for 107767252	nta-r.1 for 107794838	nta-r.1 for 107794888	osa-u.5 for 4346001	osa-u.5 for 4346600	osa-u.5 for 4345288	zma-u.5 for 100276211	zma-u.5 for 100284072	zma-u.5 for 100284576	tae-r.2 for 123121934	tae-r.2 for 123120969	tae-r.2 for 123103404	hvu-r.1 for 123399416	hvu-r.1 for 123451761	sbi-r.1 for 8069905	sbi-r.1 for 8062031	sbi-r.1 for 8063462	bdi-r.1 for 100837286	bdi-r.1 for 100836980	bdi-r.1 for 100824948	cre-r.1 for CHLRE_05g237350v5

Ortholog

Ortholog ID: 724

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

EML1

EML4

EML2

Function^*

Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein

Emsy N Terminus (ENT) domain-containing protein

Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein

protein EMSY-LIKE 3

protein EMSY-LIKE 2

protein EMSY-LIKE 3-like

protein EMSY-LIKE 1-like

protein EMSY-LIKE 3-like

protein EMSY-LIKE 1

protein EMSY-LIKE 3

hypothetical protein

protein EMSY-LIKE 3-like

protein EMSY-LIKE 1

protein EMSY-LIKE 3

protein EMSY-LIKE 4

protein EMSY-LIKE 1

protein EMSY-LIKE 3

protein EMSY-LIKE 2

protein EMSY-LIKE 3

Hop-interacting protein THI115

protein EMSY-LIKE 3

protein EMSY-LIKE 3-like

protein EMSY-LIKE 3

protein EMSY-LIKE 3-like

protein EMSY-LIKE 3

ENT domain containing protein

uncharacterized LOC100193058

ENT domain containing protein

protein EMSY-LIKE 3

protein EMSY-LIKE 3-like

protein EMSY-LIKE 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03015	mRNA surveillance pathway	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00670	One carbon pool by folate	3
bna04981	Folate transport and metabolism	3
bna00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	9
ghi03015	mRNA surveillance pathway	7
ghi03040	Spliceosome	7
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	6
cit00944	Flavone and flavonol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03460	Fanconi anemia pathway	2
gma03022	Basal transcription factors	2
gma03420	Nucleotide excision repair	2
gma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03018	RNA degradation	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	5
mtr03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2
zma04144	Endocytosis	2
zma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	4
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

820389

819051

830567

103855992

103850839

103847017

125593356

111198009

106372384

107899744

107959329

121220158

102607702

102616204

102631217

100807441

100785958

100789282

100253804

100263217

100257061

18106147

7461395

7489297

11414313

11446706

101252218

101055531

101267780

102591642

102600733

107814920

107813144

107771941

4346001

4345288

4337275

100284576

100193058

100274024

123121934

123120969

123103404

123399416

123451761

8069905

8062031

8064023

100837286

100836980

100824948

5723353

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	3	2	3	3	2	3	2	3	3	3	3	2	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to EML1 (ath-m.9 coexpression data)

Top 50 enrichment test to EML1 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**