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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TCP4   TCP family transcription factor 4 
 ath-u.5   TCP4   TCP family transcription factor 4 
 ath-r.7   TCP4   TCP family transcription factor 4 
 ath-e.2   TCP4   TCP family transcription factor 4 
 ath-m.4.bio   TCP4   TCP family transcription factor 4 
 ath-m.4.hor   TCP4   TCP family transcription factor 4 
 ath-m.4.lig   TCP4   TCP family transcription factor 4 
 ath-m.4.str   TCP4   TCP family transcription factor 4 
 ath-m.4.tis   TCP4   TCP family transcription factor 4 
 ath-u.5   TCP10   TCP domain protein 10 
 ath-u.5   TCP3   TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 
 bra-r.6   103841727   transcription factor TCP4 
 bra-r.6   103859604   transcription factor TCP4 
 bra-r.6   103867916   transcription factor TCP10 
 bna-r.1   125609044   transcription factor TCP4-like 
 bna-r.1   111215706   transcription factor TCP4-like 
 bna-r.1   106451371   transcription factor TCP10-like 
 ghi-r.1   107954451   transcription factor TCP4 
 ghi-r.1   107948729   transcription factor TCP4 
 ghi-r.1   107920204   transcription factor TCP4 
 cit-r.1   102615089   transcription factor TCP4 
 cit-r.1   102619329   transcription factor TCP4-like 
 gma-u.5   100796390   transcription factor TCP4 
 gma-u.5   100811837   transcription factor TCP4 
 gma-u.5   100810078   transcription factor TCP3 
 vvi-u.5   100248756   transcription factor TCP4 
 vvi-u.5   100243659   transcription factor TCP4 
 ppo-u.5   18095390   transcription factor TCP4 
 ppo-u.5   7467463   transcription factor TCP4 
 ppo-u.5   7471894   transcription factor TCP4 
 mtr-u.5   25487262   transcription factor TCP4 
 mtr-u.5   25502512   transcription factor TCP4 
 mtr-u.5   25487743   transcription factor TCP4 
 sly-u.5   TCP3   TCP transcription factor 3 
 sly-u.5   lanceolate   cycloidea 
 sly-u.5   TCP10   TCP transcription factor 10 
 sot-r.1   102578818   transcription factor TCP4-like 
 sot-r.1   102593018   transcription factor TCP4 
 sot-r.1   102601150   transcription factor TCP4 
 nta-r.1   107807695   transcription factor TCP4 
 nta-r.1   107773826   transcription factor TCP4-like 
 nta-r.1   107777680   transcription factor TCP4 
 osa-u.5   4325252   transcription factor PCF5-like 
 tae-r.2   123077744   transcription factor PCF5 
 tae-r.2   123060661   transcription factor PCF5 
 tae-r.2   123069224   transcription factor PCF5 
 hvu-r.1   123443148   transcription factor PCF5 
 sbi-r.1   8079512   transcription factor PCF5 
 bdi-r.1   100827760   transcription factor PCF5 

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Top 50 coexpressed genes to TCP4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TCP4 (ath-m.9 coexpression data)

CoexMap"820732"


athTCP4 | Entrez gene ID : 820732      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa tae hvu sbi bdi zma cre
Paralog 11 3 3 3 2 3 2 3 3 3 3 3 1 3 1 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045962 [list] [network] positive regulation of development, heterochronic  (8 genes)  IGI  
GO:0048826 [list] [network] cotyledon morphogenesis  (27 genes)  IGI  
GO:0048825 [list] [network] cotyledon development  (61 genes)  IMP  
GO:0009965 [list] [network] leaf morphogenesis  (103 genes)  IGI  
GO:0010150 [list] [network] leaf senescence  (128 genes)  IGI  
GO:0048366 [list] [network] leaf development  (371 genes)  IGI TAS  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO:0030154 [list] [network] cell differentiation  (627 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0001216 [list] [network] DNA-binding transcription activator activity  (45 genes)  IMP  
GO:1990837 [list] [network] sequence-specific double-stranded DNA binding  (725 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001189896.1 [sequence] [blastp]
NP_001319557.1 [sequence] [blastp]
NP_188121.1 [sequence] [blastp]
NP_850589.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001189896.1)
nucl 10  (predict for NP_001319557.1)
nucl 10  (predict for NP_188121.1)
nucl 10  (predict for NP_850589.1)
Subcellular
localization
TargetP
other 6,  chlo 5  (predict for NP_001189896.1)
other 6,  chlo 5  (predict for NP_001319557.1)
other 6,  chlo 5  (predict for NP_188121.1)
other 6,  chlo 5  (predict for NP_850589.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TCP4
ath-u.5
for
TCP4
ath-r.7
for
TCP4
ath-e.2
for
TCP4
ath-m.4.bio
for
TCP4
ath-m.4.hor
for
TCP4
ath-m.4.lig
for
TCP4
ath-m.4.str
for
TCP4
ath-m.4.tis
for
TCP4
ath-u.5
for
TCP10
ath-u.5
for
TCP3
bra-r.6
for
103841727
bra-r.6
for
103859604
bra-r.6
for
103867916
bna-r.1
for
125609044
bna-r.1
for
111215706
bna-r.1
for
106451371
ghi-r.1
for
107954451
ghi-r.1
for
107948729
ghi-r.1
for
107920204
cit-r.1
for
102615089
cit-r.1
for
102619329
gma-u.5
for
100796390
gma-u.5
for
100811837
gma-u.5
for
100810078
vvi-u.5
for
100248756
vvi-u.5
for
100243659
ppo-u.5
for
18095390
ppo-u.5
for
7467463
ppo-u.5
for
7471894
mtr-u.5
for
25487262
mtr-u.5
for
25502512
mtr-u.5
for
25487743
sly-u.5
for
TCP3
sly-u.5
for
lanceolate
sly-u.5
for
TCP10
sot-r.1
for
102578818
sot-r.1
for
102593018
sot-r.1
for
102601150
nta-r.1
for
107807695
nta-r.1
for
107773826
nta-r.1
for
107777680
osa-u.5
for
4325252
tae-r.2
for
123077744
tae-r.2
for
123060661
tae-r.2
for
123069224
hvu-r.1
for
123443148
sbi-r.1
for
8079512
bdi-r.1
for
100827760


Ortholog ID: 2072
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa tae tae tae hvu sbi bdi
Symbol TCP4 TCP10 TCP3 LOC103867916 LOC103869962 LOC103832684 LOC106435851 LOC106349336 LOC106379046 LOC107954451 LOC107920204 LOC107917737 LOC102615089 LOC102619329 LOC100802063 LOC100800275 LOC100796938 LOC100248756 LOC100243659 LOC18095390 LOC7467463 LOC7471894 LOC25502512 LOC25487743 TCP3 lanceolate TCP10 LOC102578818 LOC102593018 LOC102601150 LOC107773826 LOC107786783 LOC107794461 LOC4325252 LOC123077744 LOC123060661 LOC123069224 LOC123443148 LOC8079512 LOC100827760
Function* TCP family transcription factor 4 TCP domain protein 10 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 transcription factor TCP10 transcription factor TCP4 transcription factor TCP3 transcription factor TCP10 transcription factor TCP4-like transcription factor TCP4 transcription factor TCP4 transcription factor TCP4 transcription factor TCP4 transcription factor TCP4 transcription factor TCP4-like transcription factor TCP4 transcription factor TCP3 transcription factor TCP3 transcription factor TCP4 transcription factor TCP4 transcription factor TCP4 transcription factor TCP4 transcription factor TCP4 transcription factor TCP4 transcription factor TCP4 TCP transcription factor 3 cycloidea TCP transcription factor 10 transcription factor TCP4-like transcription factor TCP4 transcription factor TCP4 transcription factor TCP4-like transcription factor TCP4 transcription factor TCP4 transcription factor PCF5-like transcription factor PCF5 transcription factor PCF5 transcription factor PCF5 transcription factor PCF5 transcription factor PCF5 transcription factor PCF5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00561 Glycerolipid metabolism 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
bra00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00730 Thiamine metabolism 2
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma03013 Nucleocytoplasmic transport 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma00770 Pantothenate and CoA biosynthesis 2
gma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 4
sly00630 Glyoxylate and dicarboxylate metabolism 3
sly00710 Carbon fixation by Calvin cycle 3
sly00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00073 Cutin, suberine and wax biosynthesis 4
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
hvu00940 Phenylpropanoid biosynthesis 3
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 2
bdi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820732 817659 841756 103867916 103869962 103832684 106435851 106349336 106379046 107954451 107920204 107917737 102615089 102619329 100802063 100800275 100796938 100248756 100243659 18095390 7467463 7471894 25502512 25487743 100037513 543617 100736456 102578818 102593018 102601150 107773826 107786783 107794461 4325252 123077744 123060661 123069224 123443148 8079512 100827760
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