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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TRX-M4   thioredoxin M-type 4 
 ath-u.5   TRX-M4   thioredoxin M-type 4 
 ath-r.7   TRX-M4   thioredoxin M-type 4 
 ath-e.2   TRX-M4   thioredoxin M-type 4 
 ath-m.4.bio   TRX-M4   thioredoxin M-type 4 
 ath-m.4.hor   TRX-M4   thioredoxin M-type 4 
 ath-m.4.lig   TRX-M4   thioredoxin M-type 4 
 ath-m.4.str   TRX-M4   thioredoxin M-type 4 
 ath-m.4.tis   TRX-M4   thioredoxin M-type 4 
 ath-u.5   ATHM2   Thioredoxin superfamily protein 
 ath-u.5   THM1   thioredoxin M-type 1 
 bra-r.6   103858694   thioredoxin M2, chloroplastic 
 bra-r.6   103869926   thioredoxin M4, chloroplastic 
 bra-r.6   103843692   thioredoxin M-type, chloroplastic 
 bna-r.1   125586980   thioredoxin M4, chloroplastic 
 bna-r.1   106377579   thioredoxin M2, chloroplastic 
 bna-r.1   106435142   thioredoxin M2, chloroplastic 
 ghi-r.1   107897113   thioredoxin M-type, chloroplastic 
 ghi-r.1   107898951   thioredoxin 1 
 ghi-r.1   107910420   thioredoxin M-type, chloroplastic 
 cit-r.1   102612554   thioredoxin M-type, chloroplastic-like 
 cit-r.1   102621218   uncharacterized LOC102621218 
 gma-u.5   100818054   thioredoxin M1, chloroplastic 
 gma-u.5   100811845   thioredoxin 
 gma-u.5   100500292   thioredoxin-like protein 
 vvi-u.5   100245250   uncharacterized LOC100245250 
 vvi-u.5   100252295   uncharacterized LOC100252295 
 vvi-u.5   100264263   thioredoxin 
 ppo-u.5   18099015   uncharacterized LOC18099015 
 ppo-u.5   7466424   thioredoxin M-type, chloroplastic 
 mtr-u.5   25501232   thioredoxin 
 mtr-u.5   25487352   thioredoxin M4, chloroplastic 
 mtr-u.5   25489759   thioredoxin 1 
 sly-u.5   101254317   uncharacterized LOC101254317 
 sly-u.5   101249435   uncharacterized LOC101249435 
 sly-u.5   101268617   uncharacterized LOC101268617 
 sot-r.1   102601133   thioredoxin-1-like 
 sot-r.1   102588026   thioredoxin-1 
 sot-r.1   102595959   thioredoxin-1-like 
 nta-r.1   107825796   uncharacterized LOC107825796 
 nta-r.1   107828114   uncharacterized LOC107828114 
 nta-r.1   107800160   uncharacterized LOC107800160 
 osa-u.5   9270622   thioredoxin M5, chloroplastic-like 
 osa-u.5   4330107   thioredoxin M1, chloroplastic-like 
 osa-u.5   4336484   thioredoxin M2, chloroplastic-like 
 zma-u.5   103640889   thioredoxin M-type, chloroplastic-like 
 zma-u.5   100279286   putative thioredoxin superfamily protein 
 zma-u.5   100272895   putative thioredoxin superfamily protein 
 tae-r.2   123102800   thioredoxin M-type, chloroplastic-like 
 tae-r.2   123055856   thioredoxin M2, chloroplastic 
 tae-r.2   123046038   thioredoxin M2, chloroplastic 
 hvu-r.1   123398470   thioredoxin M-type, chloroplastic 
 hvu-r.1   123411781   thioredoxin 1-like 
 hvu-r.1   123427326   thioredoxin M2, chloroplastic-like 
 sbi-r.1   110431322   thioredoxin-like 
 sbi-r.1   8066203   thioredoxin M1, chloroplastic 
 sbi-r.1   8082775   thioredoxin M-type, chloroplastic 
 bdi-r.1   100830163   thioredoxin M4, chloroplastic-like 
 bdi-r.1   100835992   thioredoxin M2, chloroplastic 

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Top 50 coexpressed genes to TRX-M4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TRX-M4 (ath-m.9 coexpression data)

CoexMap"820775"


athTRX-M4 | Entrez gene ID : 820775      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 3 2 3 3 3 3 3 3 3 3 3 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043086 [list] [network] negative regulation of catalytic activity  (61 genes)  IDA  
GO:0006109 [list] [network] regulation of carbohydrate metabolic process  (85 genes)  IDA  
GO:0006979 [list] [network] response to oxidative stress  (384 genes)  IGI  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009505 [list] [network] plant-type cell wall  (504 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0008047 [list] [network] enzyme activator activity  (66 genes)  IDA  
GO:0004857 [list] [network] enzyme inhibitor activity  (129 genes)  IDA  
Protein NP_188155.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  vacu 1,  cyto_mito 1,  mito_plas 1  (predict for NP_188155.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_188155.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TRX-M4
ath-u.5
for
TRX-M4
ath-r.7
for
TRX-M4
ath-e.2
for
TRX-M4
ath-m.4.bio
for
TRX-M4
ath-m.4.hor
for
TRX-M4
ath-m.4.lig
for
TRX-M4
ath-m.4.str
for
TRX-M4
ath-m.4.tis
for
TRX-M4
ath-u.5
for
ATHM2
ath-u.5
for
THM1
bra-r.6
for
103858694
bra-r.6
for
103869926
bra-r.6
for
103843692
bna-r.1
for
125586980
bna-r.1
for
106377579
bna-r.1
for
106435142
ghi-r.1
for
107897113
ghi-r.1
for
107898951
ghi-r.1
for
107910420
cit-r.1
for
102612554
cit-r.1
for
102621218
gma-u.5
for
100818054
gma-u.5
for
100811845
gma-u.5
for
100500292
vvi-u.5
for
100245250
vvi-u.5
for
100252295
vvi-u.5
for
100264263
ppo-u.5
for
18099015
ppo-u.5
for
7466424
mtr-u.5
for
25501232
mtr-u.5
for
25487352
mtr-u.5
for
25489759
sly-u.5
for
101254317
sly-u.5
for
101249435
sly-u.5
for
101268617
sot-r.1
for
102601133
sot-r.1
for
102588026
sot-r.1
for
102595959
nta-r.1
for
107825796
nta-r.1
for
107828114
nta-r.1
for
107800160
osa-u.5
for
9270622
osa-u.5
for
4330107
osa-u.5
for
4336484
zma-u.5
for
103640889
zma-u.5
for
100279286
zma-u.5
for
100272895
tae-r.2
for
123102800
tae-r.2
for
123055856
tae-r.2
for
123046038
hvu-r.1
for
123398470
hvu-r.1
for
123411781
hvu-r.1
for
123427326
sbi-r.1
for
110431322
sbi-r.1
for
8066203
sbi-r.1
for
8082775
bdi-r.1
for
100830163
bdi-r.1
for
100835992


Ortholog ID: 1054
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi
Symbol TRX-M4 ATHM2 THM1 LOC103858694 LOC103843692 LOC103859618 LOC125586980 LOC106435142 LOC125586983 LOC107897113 LOC107910420 LOC107918616 LOC102612554 LOC102621218 LOC100811845 LOC100500292 LOC100526924 LOC100245250 LOC100252295 LOC100264263 LOC18099015 LOC25501232 LOC25487352 LOC25489759 LOC101249435 LOC101268617 LOC101261858 LOC102588026 LOC102595959 LOC102587966 LOC107825796 LOC107800160 LOC107791650 LOC9270622 LOC4330107 LOC4336484 LOC103640889 LOC542254 LOC100284385 LOC123147313 LOC123189811 LOC123398470 LOC123411781 LOC123427326 LOC110431322 LOC8066203 LOC8082775 LOC100835992 LOC100844323
Function* thioredoxin M-type 4 Thioredoxin superfamily protein thioredoxin M-type 1 thioredoxin M2, chloroplastic thioredoxin M-type, chloroplastic thioredoxin M4, chloroplastic thioredoxin M4, chloroplastic thioredoxin M2, chloroplastic thioredoxin M4, chloroplastic thioredoxin M-type, chloroplastic thioredoxin M-type, chloroplastic thioredoxin M-type, chloroplastic thioredoxin M-type, chloroplastic-like uncharacterized LOC102621218 thioredoxin thioredoxin-like protein uncharacterized LOC100526924 uncharacterized LOC100245250 uncharacterized LOC100252295 thioredoxin uncharacterized LOC18099015 thioredoxin thioredoxin M4, chloroplastic thioredoxin 1 uncharacterized LOC101249435 uncharacterized LOC101268617 uncharacterized LOC101261858 thioredoxin-1 thioredoxin-1-like thioredoxin-1-like uncharacterized LOC107825796 uncharacterized LOC107800160 uncharacterized LOC107791650 thioredoxin M5, chloroplastic-like thioredoxin M1, chloroplastic-like thioredoxin M2, chloroplastic-like thioredoxin M-type, chloroplastic-like thioredoxin M1 thioredoxin M-type thioredoxin 1 thioredoxin M2, chloroplastic thioredoxin M-type, chloroplastic thioredoxin 1-like thioredoxin M2, chloroplastic-like thioredoxin-like thioredoxin M1, chloroplastic thioredoxin M-type, chloroplastic thioredoxin M2, chloroplastic thioredoxin M-type, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00730 Thiamine metabolism 3
bra01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra00630 Glyoxylate and dicarboxylate metabolism 4
bra01200 Carbon metabolism 4
bra00260 Glycine, serine and threonine metabolism 3
bra00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 6
ghi00195 Photosynthesis 5
ghi00710 Carbon fixation by Calvin cycle 5
ghi00630 Glyoxylate and dicarboxylate metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 3
ghi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00710 Carbon fixation by Calvin cycle 4
cit01200 Carbon metabolism 4
cit00195 Photosynthesis 2
cit01230 Biosynthesis of amino acids 2
cit00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 3
gma00260 Glycine, serine and threonine metabolism 2
gma00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi00195 Photosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00620 Pyruvate metabolism 6
vvi01200 Carbon metabolism 6
vvi00010 Glycolysis / Gluconeogenesis 5
vvi00020 Citrate cycle (TCA cycle) 5
vvi00785 Lipoic acid metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 10
vvi00710 Carbon fixation by Calvin cycle 7
vvi00010 Glycolysis / Gluconeogenesis 4
vvi00630 Glyoxylate and dicarboxylate metabolism 4
vvi00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 14
ppo00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00710 Carbon fixation by Calvin cycle 4
mtr01230 Biosynthesis of amino acids 4
mtr00010 Glycolysis / Gluconeogenesis 3
mtr00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 3
sly03010 Ribosome 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 3
sly04141 Protein processing in endoplasmic reticulum 3
sly04145 Phagosome 2
sly00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot01200 Carbon metabolism 3
sot00710 Carbon fixation by Calvin cycle 2
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 4
sot00710 Carbon fixation by Calvin cycle 3
sot01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 6
nta00010 Glycolysis / Gluconeogenesis 5
nta00030 Pentose phosphate pathway 3
nta00051 Fructose and mannose metabolism 3
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 9
nta00260 Glycine, serine and threonine metabolism 2
nta00561 Glycerolipid metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00710 Carbon fixation by Calvin cycle 7
osa01200 Carbon metabolism 7
osa00195 Photosynthesis 6
osa00190 Oxidative phosphorylation 3
osa00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 3
zma00196 Photosynthesis - antenna proteins 2
zma00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 15
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04136 Autophagy - other 4
zma01212 Fatty acid metabolism 2
zma00900 Terpenoid backbone biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 5
sbi00010 Glycolysis / Gluconeogenesis 4
sbi00710 Carbon fixation by Calvin cycle 4
sbi01230 Biosynthesis of amino acids 4
sbi00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 11
sbi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi00190 Oxidative phosphorylation 2
bdi00020 Citrate cycle (TCA cycle) 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 6
bdi01200 Carbon metabolism 6
bdi00195 Photosynthesis 4
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820775 825653 839436 103858694 103843692 103859618 125586980 106435142 125586983 107897113 107910420 107918616 102612554 102621218 100811845 100500292 100526924 100245250 100252295 100264263 18099015 25501232 25487352 25489759 101249435 101268617 101261858 102588026 102595959 102587966 107825796 107800160 107791650 9270622 4330107 4336484 103640889 542254 100284385 123147313 123189811 123398470 123411781 123427326 110431322 8066203 8082775 100835992 100844323
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