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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SNL1   SIN3-like 1 
 ath-u.5   SNL1   SIN3-like 1 
 ath-r.7   SNL1   SIN3-like 1 
 ath-e.2   SNL1   SIN3-like 1 
 ath-m.4.bio   SNL1   SIN3-like 1 
 ath-m.4.hor   SNL1   SIN3-like 1 
 ath-m.4.lig   SNL1   SIN3-like 1 
 ath-m.4.str   SNL1   SIN3-like 1 
 ath-m.4.tis   SNL1   SIN3-like 1 
 ath-u.5   SNL2   SIN3-like 2 
 ath-u.5   SNL3   SIN3-like 3 
 ath-u.5   SNL4   SIN3-like 4 
 bra-r.6   103850076   paired amphipathic helix protein Sin3-like 1 
 bra-r.6   103831552   paired amphipathic helix protein Sin3-like 4 
 bra-r.6   103856106   paired amphipathic helix protein Sin3-like 2 
 bna-r.1   111204298   paired amphipathic helix protein Sin3-like 2 
 bna-r.1   125594098   paired amphipathic helix protein Sin3-like 2 
 bna-r.1   111212934   paired amphipathic helix protein Sin3-like 1 
 ghi-r.1   107886630   paired amphipathic helix protein Sin3-like 4 
 ghi-r.1   107892315   paired amphipathic helix protein Sin3-like 2 
 ghi-r.1   107893729   paired amphipathic helix protein Sin3-like 2 
 cit-r.1   102607961   paired amphipathic helix protein Sin3-like 2 
 cit-r.1   102612187   paired amphipathic helix protein Sin3-like 4 
 gma-u.5   100807181   paired amphipathic helix protein Sin3-like 2 
 gma-u.5   100781798   paired amphipathic helix protein Sin3-like 3 
 gma-u.5   100811928   paired amphipathic helix protein Sin3-like 4 
 vvi-u.5   100254234   paired amphipathic helix protein Sin3-like 2 
 vvi-u.5   100243213   paired amphipathic helix protein Sin3-like 4 
 ppo-u.5   7460792   paired amphipathic helix protein Sin3-like 4 
 ppo-u.5   7469070   paired amphipathic helix protein Sin3-like 4 
 ppo-u.5   18095308   paired amphipathic helix protein Sin3-like 2 
 mtr-u.5   11408135   paired amphipathic helix protein Sin3-like 4 
 mtr-u.5   25501504   paired amphipathic helix protein Sin3-like 3 
 mtr-u.5   11411021   paired amphipathic helix protein Sin3-like 3 
 sly-u.5   101264278   paired amphipathic helix protein Sin3-like 2 
 sly-u.5   101253486   paired amphipathic helix protein Sin3-like 4 
 sly-u.5   101261776   paired amphipathic helix protein Sin3-like 2 
 sot-r.1   102583006   paired amphipathic helix protein Sin3-like 2 
 sot-r.1   102584539   paired amphipathic helix protein Sin3-like 4 
 sot-r.1   102602535   paired amphipathic helix protein Sin3-like 2 
 nta-r.1   107808124   paired amphipathic helix protein Sin3-like 2 
 nta-r.1   107805514   paired amphipathic helix protein Sin3-like 2 
 nta-r.1   107775868   paired amphipathic helix protein Sin3-like 3 
 osa-u.5   4326133   paired amphipathic helix protein Sin3-like 3 
 osa-u.5   4337520   paired amphipathic helix protein Sin3-like 4 
 zma-u.5   103649898   paired amphipathic helix protein Sin3-like 3 
 zma-u.5   103634740   paired amphipathic helix protein Sin3-like 4 
 zma-u.5   103629312   paired amphipathic helix protein Sin3-like 4 
 tae-r.2   123179759   paired amphipathic helix protein Sin3-like 4 
 tae-r.2   123059752   paired amphipathic helix protein Sin3-like 3 
 tae-r.2   123068176   paired amphipathic helix protein Sin3-like 3 
 hvu-r.1   123442356   paired amphipathic helix protein Sin3-like 3 
 hvu-r.1   123430374   paired amphipathic helix protein Sin3-like 4 
 sbi-r.1   8065349   paired amphipathic helix protein Sin3-like 5 
 sbi-r.1   8079088   paired amphipathic helix protein Sin3-like 3 
 bdi-r.1   100833378   paired amphipathic helix protein Sin3-like 4 
 bdi-r.1   100824976   paired amphipathic helix protein Sin3-like 3 
 cre-r.1   CHLRE_03g180800v5   uncharacterized protein 

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Top 50 coexpressed genes to SNL1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SNL1 (ath-m.9 coexpression data)

CoexMap"821265"


athSNL1 | Entrez gene ID : 821265      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 2 3 2 3 3 3 3 3 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IDA  
GO CC
GO:0070822 [list] [network] Sin3-type complex  (8 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001189789.1 [sequence] [blastp]
NP_186781.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cysk 2,  chlo 1,  cysk_plas 1  (predict for NP_001189789.1)
nucl 6,  cysk 2,  chlo 1,  cysk_plas 1  (predict for NP_186781.4)
Subcellular
localization
TargetP
mito 7  (predict for NP_001189789.1)
mito 7  (predict for NP_186781.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SNL1
ath-u.5
for
SNL1
ath-r.7
for
SNL1
ath-e.2
for
SNL1
ath-m.4.bio
for
SNL1
ath-m.4.hor
for
SNL1
ath-m.4.lig
for
SNL1
ath-m.4.str
for
SNL1
ath-m.4.tis
for
SNL1
ath-u.5
for
SNL2
ath-u.5
for
SNL3
ath-u.5
for
SNL4
bra-r.6
for
103850076
bra-r.6
for
103831552
bra-r.6
for
103856106
bna-r.1
for
111204298
bna-r.1
for
125594098
bna-r.1
for
111212934
ghi-r.1
for
107886630
ghi-r.1
for
107892315
ghi-r.1
for
107893729
cit-r.1
for
102607961
cit-r.1
for
102612187
gma-u.5
for
100807181
gma-u.5
for
100781798
gma-u.5
for
100811928
vvi-u.5
for
100254234
vvi-u.5
for
100243213
ppo-u.5
for
7460792
ppo-u.5
for
7469070
ppo-u.5
for
18095308
mtr-u.5
for
11408135
mtr-u.5
for
25501504
mtr-u.5
for
11411021
sly-u.5
for
101264278
sly-u.5
for
101253486
sly-u.5
for
101261776
sot-r.1
for
102583006
sot-r.1
for
102584539
sot-r.1
for
102602535
nta-r.1
for
107808124
nta-r.1
for
107805514
nta-r.1
for
107775868
osa-u.5
for
4326133
osa-u.5
for
4337520
zma-u.5
for
103649898
zma-u.5
for
103634740
zma-u.5
for
103629312
tae-r.2
for
123179759
tae-r.2
for
123059752
tae-r.2
for
123068176
hvu-r.1
for
123442356
hvu-r.1
for
123430374
sbi-r.1
for
8065349
sbi-r.1
for
8079088
bdi-r.1
for
100833378
bdi-r.1
for
100824976
cre-r.1
for
CHLRE_03g180800v5


Ortholog ID: 1625
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol SNL1 SNL3 SNL4 LOC103850076 LOC103831552 LOC103830897 LOC106353947 LOC106429554 LOC106431788 LOC107886630 LOC107939074 LOC107945780 LOC102607961 LOC102612187 LOC100807181 LOC100812405 LOC100813398 LOC100254234 LOC100243213 LOC7460792 LOC7469070 LOC18095308 LOC11408135 LOC25501504 LOC11411021 LOC101264278 LOC101253486 LOC101261776 LOC102583006 LOC102584539 LOC102602535 LOC107805514 LOC107766319 LOC107809360 LOC4326133 LOC4337520 LOC103649898 LOC103634740 LOC103629312 LOC123059752 LOC123068176 LOC123076722 LOC123442356 LOC123430374 LOC8065349 LOC8079088 LOC100833378 LOC100824976 CHLRE_03g180800v5
Function* SIN3-like 1 SIN3-like 3 SIN3-like 4 paired amphipathic helix protein Sin3-like 1 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 2 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 5 paired amphipathic helix protein Sin3-like 3 paired amphipathic helix protein Sin3-like 4 paired amphipathic helix protein Sin3-like 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 3
ath03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
ath03083 Polycomb repressive complex 2
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 2
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00380 Tryptophan metabolism 2
bna04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma03082 ATP-dependent chromatin remodeling 2
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma00564 Glycerophospholipid metabolism 2
gma00565 Ether lipid metabolism 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 4
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 6
nta04070 Phosphatidylinositol signaling system 4
nta04145 Phagosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 3
zma04070 Phosphatidylinositol signaling system 2
zma03083 Polycomb repressive complex 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 2
zma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae00500 Starch and sucrose metabolism 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 2
tae03010 Ribosome 2
tae00770 Pantothenate and CoA biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03250 Viral life cycle - HIV-1 2
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821265 839032 843342 103850076 103831552 103830897 106353947 106429554 106431788 107886630 107939074 107945780 102607961 102612187 100807181 100812405 100813398 100254234 100243213 7460792 7469070 18095308 11408135 25501504 11411021 101264278 101253486 101261776 102583006 102584539 102602535 107805514 107766319 107809360 4326133 4337520 103649898 103634740 103629312 123059752 123068176 123076722 123442356 123430374 8065349 8079088 100833378 100824976 5728474
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