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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-u.5   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-r.7   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-e.2   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-m.4.bio   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-m.4.hor   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-m.4.lig   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-m.4.str   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-m.4.tis   PGSIP1   plant glycogenin-like starch initiation protein 1 
 ath-u.5   PGSIP2   plant glycogenin-like starch initiation protein 2 
 bra-r.6   103869539   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 bra-r.6   103837916   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 bna-r.1   106347361   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 bna-r.1   106391020   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 ghi-r.1   107957523   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 ghi-r.1   107924682   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 ghi-r.1   107914465   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 cit-r.1   102610419   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 cit-r.1   102620058   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 gma-u.5   100783884   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 gma-u.5   100780439   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 gma-u.5   100796246   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 vvi-u.5   100248912   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 vvi-u.5   100245489   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 ppo-u.5   7492448   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 ppo-u.5   7466731   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 ppo-u.5   7466834   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 mtr-u.5   11424982   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 mtr-u.5   25482405   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 sly-u.5   101245416   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 sly-u.5   101263017   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 sot-r.1   102583862   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 sot-r.1   102593826   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 nta-r.1   107759957   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 nta-r.1   107775958   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like 
 nta-r.1   107792199   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like 
 osa-u.5   4324841   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 osa-u.5   9271451   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 zma-u.5   100286027   uncharacterized LOC100286027 
 zma-u.5   100193311   uncharacterized LOC100193311 
 tae-r.2   123062962   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 tae-r.2   123080158   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 tae-r.2   123134186   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 hvu-r.1   123445140   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like 
 hvu-r.1   123443192   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like 
 sbi-r.1   8063129   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 sbi-r.1   8077132   putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 
 bdi-r.1   100846502   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 
 bdi-r.1   100844966   UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 

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Top 50 coexpressed genes to PGSIP1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PGSIP1 (ath-m.9 coexpression data)

CoexMap"821397"


athPGSIP1 | Entrez gene ID : 821397      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 2 3 2 3 2 3 2 2 2 3 2 2 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010417 [list] [network] glucuronoxylan biosynthetic process  (12 genes)  IMP  
GO:0045492 [list] [network] xylan biosynthetic process  (31 genes)  IDA IGI  
GO:0005982 [list] [network] starch metabolic process  (47 genes)  IMP  
GO:0009834 [list] [network] plant-type secondary cell wall biogenesis  (47 genes)  IGI  
GO CC
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0080116 [list] [network] glucuronoxylan glucuronosyltransferase activity  (4 genes)  IMP  
GO:0015020 [list] [network] glucuronosyltransferase activity  (25 genes)  IDA  
GO:0016757 [list] [network] glycosyltransferase activity  (554 genes)  ISS  
Protein NP_001030722.1 [sequence] [blastp]
NP_001189927.1 [sequence] [blastp]
NP_566615.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  mito 1,  mito_plas 1,  cyto 1,  golg 1,  cysk_nucl 1  (predict for NP_001030722.1)
nucl 3,  cyto 2,  golg 1,  cysk_nucl 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_001189927.1)
nucl 3,  cyto 2,  golg 1,  cysk_nucl 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_566615.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001030722.1)
chlo 8  (predict for NP_001189927.1)
chlo 7  (predict for NP_566615.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PGSIP1
ath-u.5
for
PGSIP1
ath-r.7
for
PGSIP1
ath-e.2
for
PGSIP1
ath-m.4.bio
for
PGSIP1
ath-m.4.hor
for
PGSIP1
ath-m.4.lig
for
PGSIP1
ath-m.4.str
for
PGSIP1
ath-m.4.tis
for
PGSIP1
ath-u.5
for
PGSIP2
bra-r.6
for
103869539
bra-r.6
for
103837916
bna-r.1
for
106347361
bna-r.1
for
106391020
ghi-r.1
for
107957523
ghi-r.1
for
107924682
ghi-r.1
for
107914465
cit-r.1
for
102610419
cit-r.1
for
102620058
gma-u.5
for
100783884
gma-u.5
for
100780439
gma-u.5
for
100796246
vvi-u.5
for
100248912
vvi-u.5
for
100245489
ppo-u.5
for
7492448
ppo-u.5
for
7466731
ppo-u.5
for
7466834
mtr-u.5
for
11424982
mtr-u.5
for
25482405
sly-u.5
for
101245416
sly-u.5
for
101263017
sot-r.1
for
102583862
sot-r.1
for
102593826
nta-r.1
for
107759957
nta-r.1
for
107775958
nta-r.1
for
107792199
osa-u.5
for
4324841
osa-u.5
for
9271451
zma-u.5
for
100286027
zma-u.5
for
100193311
tae-r.2
for
123062962
tae-r.2
for
123080158
tae-r.2
for
123134186
hvu-r.1
for
123445140
hvu-r.1
for
123443192
sbi-r.1
for
8063129
sbi-r.1
for
8077132
bdi-r.1
for
100846502
bdi-r.1
for
100844966


Ortholog ID: 2279
Species ath ath bra bra bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol PGSIP1 PGSIP2 LOC103869539 LOC103835744 LOC106347361 LOC106414099 LOC107957523 LOC107897172 LOC107950688 LOC102610419 LOC102620058 LOC100783884 LOC100796246 LOC100787339 LOC100248912 LOC100245489 LOC7492448 LOC7466731 LOC7466834 LOC11424982 LOC25482405 LOC101245416 LOC101263017 LOC102583862 LOC102593826 LOC107759957 LOC107792199 LOC107801096 LOC4324841 LOC9271451 LOC100286027 LOC100193311 LOC123182097 LOC123056804 LOC123071832 LOC123445140 LOC123443192 LOC8063129 LOC8077132 LOC100846502 LOC100844966
Function* plant glycogenin-like starch initiation protein 1 plant glycogenin-like starch initiation protein 2 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 uncharacterized LOC100286027 uncharacterized LOC100193311 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like UDP-glucuronate:xylan alpha-glucuronosyltransferase 1-like UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 3
ath00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00910 Nitrogen metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 9
ghi00513 Various types of N-glycan biosynthesis 9
ghi04141 Protein processing in endoplasmic reticulum 9
ghi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 6
ghi00513 Various types of N-glycan biosynthesis 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi00100 Steroid biosynthesis 2
ghi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit00510 N-Glycan biosynthesis 3
cit00513 Various types of N-glycan biosynthesis 3
cit04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00020 Citrate cycle (TCA cycle) 8
gma01200 Carbon metabolism 8
gma01210 2-Oxocarboxylic acid metabolism 8
gma03015 mRNA surveillance pathway 5
gma00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 5
vvi00513 Various types of N-glycan biosynthesis 4
vvi00510 N-Glycan biosynthesis 3
vvi00514 Other types of O-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
sly04141 Protein processing in endoplasmic reticulum 2
sly00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00071 Fatty acid degradation 2
nta00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta04145 Phagosome 4
nta00071 Fatty acid degradation 2
nta00040 Pentose and glucuronate interconversions 2
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 3
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 5
tae00500 Starch and sucrose metabolism 5
tae00999 Biosynthesis of various plant secondary metabolites 5
tae04145 Phagosome 2
tae04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04145 Phagosome 2
tae04517 IgSF CAM signaling 2
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 6
tae00360 Phenylalanine metabolism 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 4
hvu00020 Citrate cycle (TCA cycle) 3
hvu00640 Propanoate metabolism 2
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00073 Cutin, suberine and wax biosynthesis 2
bdi04146 Peroxisome 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821397 844049 103869539 103835744 106347361 106414099 107957523 107897172 107950688 102610419 102620058 100783884 100796246 100787339 100248912 100245489 7492448 7466731 7466834 11424982 25482405 101245416 101263017 102583862 102593826 107759957 107792199 107801096 4324841 9271451 100286027 100193311 123182097 123056804 123071832 123445140 123443192 8063129 8077132 100846502 100844966
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