ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-r.7	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-e.2	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.bio	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.hor	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.lig	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.str	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-m.4.tis	AT3G23690	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	AT3G07340	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
ath-u.5	AT5G48560	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
bra-r.6	103832202	transcription factor bHLH77
bra-r.6	103854544	transcription factor bHLH78
bra-r.6	103868330	transcription factor bHLH77
bna-r.1	106381806	transcription factor bHLH77
bna-r.1	106364928	transcription factor bHLH78-like
ghi-r.1	107922724	transcription factor bHLH62
ghi-r.1	107914772	transcription factor bHLH62
ghi-r.1	107927495	transcription factor bHLH62
cit-r.1	102615527	transcription factor bHLH62
cit-r.1	102618495	transcription factor bHLH62
gma-u.5	100776143	transcription factor bHLH62
gma-u.5	100787699	transcription factor bHLH62
gma-u.5	100812081	transcription factor bHLH62
vvi-u.5	100259005	transcription factor bHLH77
ppo-u.5	7471175	transcription factor bHLH62
ppo-u.5	7488588	transcription factor bHLH77
ppo-u.5	7462032	transcription factor bHLH77
mtr-u.5	25498190	transcription factor bHLH62
mtr-u.5	11419890	transcription factor bHLH62
sly-u.5	101263721	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
sly-u.5	101265273	transcription factor bHLH62-like
sly-u.5	101262401	transcription factor bHLH78-like
sot-r.1	102599641	transcription factor bHLH62
sot-r.1	102590121	transcription factor bHLH62
sot-r.1	102591091	transcription factor bHLH62-like
nta-r.1	107824098	transcription factor bHLH62
nta-r.1	107798943	transcription factor bHLH62-like
nta-r.1	107827140	transcription factor bHLH62
osa-u.5	4347486	transcription factor BHLH089-like
osa-u.5	4346087	transcription factor BHLH094-like
osa-u.5	4324327	transcription factor bHLH77
zma-u.5	100193765	uncharacterized LOC100193765
zma-u.5	100502193	uncharacterized LOC100502193
zma-u.5	100285547	BHLH transcription factor
tae-r.2	123063055	transcription factor bHLH77
tae-r.2	123071954	transcription factor bHLH77
tae-r.2	123168036	transcription factor BHLH094
hvu-r.1	123407905	transcription factor BHLH094-like
hvu-r.1	123445198	transcription factor bHLH77-like
sbi-r.1	110433137	transcription factor bHLH49-like
sbi-r.1	8056168	transcription factor bHLH79
sbi-r.1	8063975	transcription factor bHLH78
bdi-r.1	100838672	transcription factor bHLH77
bdi-r.1	100836886	transcription factor bHLH78

Top 50 coexpressed genes to AT3G23690 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G23690 (ath-m.9 coexpression data)

CoexMap"821950"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1618 genes)

TAS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_189011.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto_nucl 5

(predict for NP_189011.2)

Subcellular
localization
TargetP

other 9

(predict for NP_189011.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT3G23690	ath-u.5 for AT3G23690	ath-r.7 for AT3G23690	ath-e.2 for AT3G23690	ath-m.4.bio for AT3G23690	ath-m.4.hor for AT3G23690	ath-m.4.lig for AT3G23690	ath-m.4.str for AT3G23690	ath-m.4.tis for AT3G23690	ath-u.5 for AT3G07340	ath-u.5 for AT5G48560	bra-r.6 for 103832202	bra-r.6 for 103854544	bra-r.6 for 103868330	bna-r.1 for 106381806	bna-r.1 for 106364928	ghi-r.1 for 107922724	ghi-r.1 for 107914772	ghi-r.1 for 107927495	cit-r.1 for 102615527	cit-r.1 for 102618495	gma-u.5 for 100776143	gma-u.5 for 100787699	gma-u.5 for 100812081	vvi-u.5 for 100259005	ppo-u.5 for 7471175	ppo-u.5 for 7488588	ppo-u.5 for 7462032	mtr-u.5 for 25498190	mtr-u.5 for 11419890	sly-u.5 for 101263721	sly-u.5 for 101265273	sly-u.5 for 101262401	sot-r.1 for 102599641	sot-r.1 for 102590121	sot-r.1 for 102591091	nta-r.1 for 107824098	nta-r.1 for 107798943	nta-r.1 for 107827140	osa-u.5 for 4347486	osa-u.5 for 4346087	osa-u.5 for 4324327	zma-u.5 for 100193765	zma-u.5 for 100502193	zma-u.5 for 100285547	tae-r.2 for 123063055	tae-r.2 for 123071954	tae-r.2 for 123168036	hvu-r.1 for 123407905	hvu-r.1 for 123445198	sbi-r.1 for 110433137	sbi-r.1 for 8056168	sbi-r.1 for 8063975	bdi-r.1 for 100838672	bdi-r.1 for 100836886

Ortholog

Ortholog ID: 1201

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

basic helix-loop-helix (bHLH) DNA-binding superfamily protein

transcription factor bHLH77

transcription factor bHLH78

transcription factor bHLH78-like

transcription factor bHLH77

transcription factor bHLH78-like

transcription factor bHLH62

transcription factor bHLH77

transcription factor bHLH62

transcription factor bHLH77

transcription factor bHLH62

basic helix-loop-helix (bHLH) DNA-binding superfamily protein

transcription factor bHLH78-like

transcription factor bHLH62

transcription factor bHLH62-like

transcription factor bHLH77

transcription factor bHLH62

transcription factor BHLH089-like

transcription factor BHLH094-like

transcription factor bHLH77

BHLH transcription factor

uncharacterized LOC100278938

Transcription factor bHLH62

transcription factor bHLH77

transcription factor BHLH094

transcription factor bHLH77

transcription factor BHLH094-like

transcription factor bHLH77-like

transcription factor bHLH49-like

transcription factor bHLH79

transcription factor bHLH78

transcription factor bHLH77

transcription factor bHLH78

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00100	Steroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00562	Inositol phosphate metabolism	2
ath04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	2
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	3
bra01240	Biosynthesis of cofactors	3
bra00040	Pentose and glucuronate interconversions	2
bra00053	Ascorbate and aldarate metabolism	2
bra00541	Biosynthesis of various nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00010	Glycolysis / Gluconeogenesis	2
bna00071	Fatty acid degradation	2
bna00350	Tyrosine metabolism	2
bna00620	Pyruvate metabolism	2
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00010	Glycolysis / Gluconeogenesis	2
bna00071	Fatty acid degradation	2
bna00350	Tyrosine metabolism	2
bna00620	Pyruvate metabolism	2
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00053	Ascorbate and aldarate metabolism	2
ghi00340	Histidine metabolism	2
ghi00562	Inositol phosphate metabolism	2
ghi01230	Biosynthesis of amino acids	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	4
cit00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3
ppo00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01230	Biosynthesis of amino acids	2
sly00010	Glycolysis / Gluconeogenesis	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00920	Sulfur metabolism	4
hvu01320	Sulfur cycle	4
hvu00030	Pentose phosphate pathway	2
hvu00480	Glutathione metabolism	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	3

Expression

Expression pattern

Entrez Gene ID^*

821950

819922

834912

103832202

103868330

103874966

106364928

111215930

106425145

107922724

107914772

121232156

102615527

102618495

100776143

100812081

100801233

100259005

7471175

7488588

7462032

25498190

11419890

101263721

101262401

101268319

102590121

102591091

102603736

107764585

107797129

107820619

4347486

4346087

4324327

100285547

100278938

100216628

123063055

123168036

123080260

123407905

123445198

110433137

8056168

8063975

100838672

100836886

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	2	3	2	3	1	3	2	3	3	3	3	3	3	2	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G23690 (ath-m.9 coexpression data)

Top 50 enrichment test to AT3G23690 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**