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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SKL1   shikimate kinase like 1 
 ath-u.5   SKL1   shikimate kinase like 1 
 ath-r.7   SKL1   shikimate kinase like 1 
 ath-e.2   SKL1   shikimate kinase like 1 
 ath-m.4.bio   SKL1   shikimate kinase like 1 
 ath-m.4.hor   SKL1   shikimate kinase like 1 
 ath-m.4.lig   SKL1   shikimate kinase like 1 
 ath-m.4.str   SKL1   shikimate kinase like 1 
 ath-m.4.tis   SKL1   shikimate kinase like 1 
 bra-r.6   103875266   probable inactive shikimate kinase like 1, chloroplastic 
 bna-r.1   106410266   probable inactive shikimate kinase like 1, chloroplastic 
 bna-r.1   125575955   probable inactive shikimate kinase like 1, chloroplastic 
 ghi-r.1   107948502   probable inactive shikimate kinase like 1, chloroplastic 
 ghi-r.1   107948501   probable inactive shikimate kinase like 1, chloroplastic 
 cit-r.1   102609441   probable inactive shikimate kinase like 1, chloroplastic 
 gma-u.5   100781076   shikimate kinase, chloroplastic-like 
 gma-u.5   100526928   probable inactive shikimate kinase like 1, chloroplastic 
 vvi-u.5   100261362   probable inactive shikimate kinase like 1, chloroplastic 
 vvi-u.5   100266919   probable inactive shikimate kinase like 1, chloroplastic 
 ppo-u.5   18107134   probable inactive shikimate kinase like 1, chloroplastic 
 mtr-u.5   25495942   probable inactive shikimate kinase like 1, chloroplastic 
 sly-u.5   101260492   probable inactive shikimate kinase like 1, chloroplastic 
 sot-r.1   102585983   probable inactive shikimate kinase like 1, chloroplastic 
 nta-r.1   107808816   putative inactive shikimate kinase like 1, chloroplastic 
 nta-r.1   107795619   putative inactive shikimate kinase like 1, chloroplastic 
 osa-u.5   4326439   probable inactive shikimate kinase like 1, chloroplastic 
 zma-u.5   100283991   shikimate kinase family protein 
 tae-r.2   123077212   probable inactive shikimate kinase like 1, chloroplastic 
 tae-r.2   123064856   probable inactive shikimate kinase like 1, chloroplastic 
 tae-r.2   123057852   probable inactive shikimate kinase like 1, chloroplastic 
 hvu-r.1   123442742   probable inactive shikimate kinase like 1, chloroplastic 
 sbi-r.1   8068868   probable inactive shikimate kinase like 1, chloroplastic 
 bdi-r.1   100828792   probable inactive shikimate kinase like 1, chloroplastic 

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Top 50 coexpressed genes to SKL1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SKL1 (ath-m.9 coexpression data)

CoexMap"822306"


athSKL1 | Entrez gene ID : 822306      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 2 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010027 [list] [network] thylakoid membrane organization  (49 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0004765 [list] [network] shikimate kinase activity  (4 genes)  IDA  
Protein NP_001118711.1 [sequence] [blastp]
NP_001118712.1 [sequence] [blastp]
NP_189325.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 2  (predict for NP_001118711.1)
chlo 8,  mito 2  (predict for NP_001118712.1)
chlo 8,  mito 2  (predict for NP_189325.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001118711.1)
chlo 9  (predict for NP_001118712.1)
chlo 9  (predict for NP_189325.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SKL1
ath-u.5
for
SKL1
ath-r.7
for
SKL1
ath-e.2
for
SKL1
ath-m.4.bio
for
SKL1
ath-m.4.hor
for
SKL1
ath-m.4.lig
for
SKL1
ath-m.4.str
for
SKL1
ath-m.4.tis
for
SKL1
bra-r.6
for
103875266
bna-r.1
for
106410266
bna-r.1
for
125575955
ghi-r.1
for
107948502
ghi-r.1
for
107948501
cit-r.1
for
102609441
gma-u.5
for
100781076
gma-u.5
for
100526928
vvi-u.5
for
100261362
vvi-u.5
for
100266919
ppo-u.5
for
18107134
mtr-u.5
for
25495942
sly-u.5
for
101260492
sot-r.1
for
102585983
nta-r.1
for
107808816
nta-r.1
for
107795619
osa-u.5
for
4326439
zma-u.5
for
100283991
tae-r.2
for
123077212
tae-r.2
for
123064856
tae-r.2
for
123057852
hvu-r.1
for
123442742
sbi-r.1
for
8068868
bdi-r.1
for
100828792


Ortholog ID: 10118
Species ath bra bna bna ghi ghi cit gma gma vvi vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol SKL1 LOC103875266 LOC106410266 LOC125575955 LOC107948502 LOC107948501 LOC102609441 LOC100781076 LOC100526928 LOC100261362 LOC100266919 LOC18107134 LOC25495942 LOC101260492 LOC102585983 LOC107808816 LOC107795619 LOC4326439 LOC100283991 LOC123077212 LOC123064856 LOC123057852 LOC123442742 LOC8068868 LOC100828792
Function* shikimate kinase like 1 probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic shikimate kinase, chloroplastic-like probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic putative inactive shikimate kinase like 1, chloroplastic putative inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic shikimate kinase family protein probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic probable inactive shikimate kinase like 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
bna00450 Selenocompound metabolism 2
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03060 Protein export 3
mtr00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00010 Glycolysis / Gluconeogenesis 2
nta00020 Citrate cycle (TCA cycle) 2
nta00620 Pyruvate metabolism 2
nta00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00750 Vitamin B6 metabolism 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
tae03015 mRNA surveillance pathway 3
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 8
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822306 103875266 106410266 125575955 107948502 107948501 102609441 100781076 100526928 100261362 100266919 18107134 25495942 101260492 102585983 107808816 107795619 4326439 100283991 123077212 123064856 123057852 123442742 8068868 100828792
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