ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-u.5	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-r.7	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-e.2	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-m.4.bio	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-m.4.hor	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-m.4.lig	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-m.4.str	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-m.4.tis	AT3G28450	Leucine-rich repeat protein kinase family protein
ath-u.5	AT1G27190	Leucine-rich repeat protein kinase family protein
bra-r.6	103854196	inactive LRR receptor-like serine/threonine-protein kinase BIR2
bra-r.6	103840693	probable inactive receptor kinase At1g27190
bna-r.1	125587657	probable inactive receptor kinase At1g27190
bna-r.1	111197771	probable inactive receptor kinase At1g27190
bna-r.1	106371135	inactive LRR receptor-like serine/threonine-protein kinase BIR2
ghi-r.1	107909604	probable inactive receptor kinase At1g27190
ghi-r.1	107911794	inactive LRR receptor-like serine/threonine-protein kinase BIR2
ghi-r.1	107924185	inactive LRR receptor-like serine/threonine-protein kinase BIR2
cit-r.1	102629594	probable inactive receptor kinase At1g27190
cit-r.1	102611300	inactive LRR receptor-like serine/threonine-protein kinase BIR2
gma-u.5	100814544	inactive LRR receptor-like serine/threonine-protein kinase BIR2
gma-u.5	100810378	inactive LRR receptor-like serine/threonine-protein kinase BIR2
vvi-u.5	100262086	probable inactive receptor kinase At1g27190
vvi-u.5	100853588	probable inactive receptor kinase At1g27190
ppo-u.5	7493582	probable inactive receptor kinase At1g27190
ppo-u.5	18106557	probable inactive receptor kinase At1g27190
ppo-u.5	7487850	inactive LRR receptor-like serine/threonine-protein kinase BIR2
mtr-u.5	11418737	inactive LRR receptor-like serine/threonine-protein kinase BIR2
sly-u.5	101262073	inactive LRR receptor-like serine/threonine-protein kinase BIR2
sly-u.5	101247820	probable inactive receptor kinase At1g27190
sly-u.5	101263367	inactive LRR receptor-like serine/threonine-protein kinase BIR2
sot-r.1	102599851	probable inactive receptor kinase At1g27190
sot-r.1	102585976	probable inactive receptor kinase At1g27190
sot-r.1	102582671	probable inactive receptor kinase At1g27190
nta-r.1	107759130	inactive LRR receptor-like serine/threonine-protein kinase BIR2
nta-r.1	107830581	inactive LRR receptor-like serine/threonine-protein kinase BIR2
nta-r.1	107826781	inactive LRR receptor-like serine/threonine-protein kinase BIR2
osa-u.5	4336221	probable inactive receptor kinase At1g27190
zma-u.5	103641783	inactive LRR receptor-like serine/threonine-protein kinase BIR2
zma-u.5	103643796	uncharacterized LOC103643796
zma-u.5	103646296	probable inactive receptor kinase At1g27190
tae-r.2	123053712	probable inactive receptor kinase At1g27190
tae-r.2	123045824	probable inactive receptor kinase At1g27190
tae-r.2	123189586	probable inactive receptor kinase At1g27190
hvu-r.1	123427063	probable inactive receptor kinase At1g27190
sbi-r.1	8060171	probable inactive receptor kinase At1g27190
bdi-r.1	100830788	probable inactive receptor kinase At1g27190

Top 50 coexpressed genes to AT3G28450 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G28450 (ath-m.9 coexpression data)

CoexMap"822474"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:1900425 [list] [network] negative regulation of defense response to bacterium	(17 genes)	IMP
GO:1900150 [list] [network] regulation of defense response to fungus	(39 genes)	IMP

GO CC

GO:0005829 [list] [network] cytosol	(2593 genes)	HDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA IDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA ISM

GO MF

GO:0005524 [list] [network] ATP binding	(321 genes)	IDA
GO:0004672 [list] [network] protein kinase activity	(737 genes)	IDA
GO:0016301 [list] [network] kinase activity	(1055 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_189486.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, golg_plas 4, golg 2

(predict for NP_189486.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_189486.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT3G28450	ath-u.5 for AT3G28450	ath-r.7 for AT3G28450	ath-e.2 for AT3G28450	ath-m.4.bio for AT3G28450	ath-m.4.hor for AT3G28450	ath-m.4.lig for AT3G28450	ath-m.4.str for AT3G28450	ath-m.4.tis for AT3G28450	ath-u.5 for AT1G27190	bra-r.6 for 103854196	bra-r.6 for 103840693	bna-r.1 for 125587657	bna-r.1 for 111197771	bna-r.1 for 106371135	ghi-r.1 for 107909604	ghi-r.1 for 107911794	ghi-r.1 for 107924185	cit-r.1 for 102629594	cit-r.1 for 102611300	gma-u.5 for 100814544	gma-u.5 for 100810378	vvi-u.5 for 100262086	vvi-u.5 for 100853588	ppo-u.5 for 7493582	ppo-u.5 for 18106557	ppo-u.5 for 7487850	mtr-u.5 for 11418737	sly-u.5 for 101262073	sly-u.5 for 101247820	sly-u.5 for 101263367	sot-r.1 for 102599851	sot-r.1 for 102585976	sot-r.1 for 102582671	nta-r.1 for 107759130	nta-r.1 for 107830581	nta-r.1 for 107826781	osa-u.5 for 4336221	zma-u.5 for 103641783	zma-u.5 for 103643796	zma-u.5 for 103646296	tae-r.2 for 123053712	tae-r.2 for 123045824	tae-r.2 for 123189586	hvu-r.1 for 123427063	sbi-r.1 for 8060171	bdi-r.1 for 100830788

Ortholog

Ortholog ID: 3019

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Leucine-rich repeat protein kinase family protein

inactive LRR receptor-like serine/threonine-protein kinase BIR2