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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   EDD1   glycine-tRNA ligase 
 ath-u.5   EDD1   glycine-tRNA ligase 
 ath-r.7   EDD1   glycine-tRNA ligase 
 ath-e.2   EDD1   glycine-tRNA ligase 
 ath-m.4.bio   EDD1   glycine-tRNA ligase 
 ath-m.4.hor   EDD1   glycine-tRNA ligase 
 ath-m.4.lig   EDD1   glycine-tRNA ligase 
 ath-m.4.str   EDD1   glycine-tRNA ligase 
 ath-m.4.tis   EDD1   glycine-tRNA ligase 
 bra-r.6   103830664   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 bna-r.1   106405545   glycine--tRNA ligase, chloroplastic/mitochondrial 2-like 
 bna-r.1   106353665   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 ghi-r.1   107937450   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 ghi-r.1   121224102   glycine--tRNA ligase, chloroplastic/mitochondrial 2-like 
 ghi-r.1   107926326   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 cit-r.1   102624803   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 gma-u.5   100787365   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 vvi-u.5   100246137   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 ppo-u.5   7486786   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 mtr-u.5   25500059   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 sly-u.5   101256217   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 sot-r.1   102601379   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 nta-r.1   107830076   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 nta-r.1   107811104   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 osa-u.5   4339847   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 zma-u.5   103638191   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 tae-r.2   123164622   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 tae-r.2   123148994   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 tae-r.2   123088640   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 hvu-r.1   123413444   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 sbi-r.1   8066859   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 bdi-r.1   100842002   glycine--tRNA ligase, chloroplastic/mitochondrial 2 
 cre-r.1   CHLRE_10g433000v5   uncharacterized protein 

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Top 50 coexpressed genes to EDD1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EDD1 (ath-m.9 coexpression data)

CoexMap"823966"


athEDD1 | Entrez gene ID : 823966      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00970 [list] [network] Aminoacyl-tRNA biosynthesis (713 genes)
GO BP
GO:0006426 [list] [network] glycyl-tRNA aminoacylation  (2 genes)  ISS  
GO:0045995 [list] [network] regulation of embryonic development  (14 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO MF
GO:0004820 [list] [network] glycine-tRNA ligase activity  (3 genes)  ISS  
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  ISS  
Protein NP_190394.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_190394.3)
Subcellular
localization
TargetP
chlo 8  (predict for NP_190394.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
EDD1
ath-u.5
for
EDD1
ath-r.7
for
EDD1
ath-e.2
for
EDD1
ath-m.4.bio
for
EDD1
ath-m.4.hor
for
EDD1
ath-m.4.lig
for
EDD1
ath-m.4.str
for
EDD1
ath-m.4.tis
for
EDD1
bra-r.6
for
103830664
bna-r.1
for
106405545
bna-r.1
for
106353665
ghi-r.1
for
107937450
ghi-r.1
for
121224102
ghi-r.1
for
107926326
cit-r.1
for
102624803
gma-u.5
for
100787365
vvi-u.5
for
100246137
ppo-u.5
for
7486786
mtr-u.5
for
25500059
sly-u.5
for
101256217
sot-r.1
for
102601379
nta-r.1
for
107830076
nta-r.1
for
107811104
osa-u.5
for
4339847
zma-u.5
for
103638191
tae-r.2
for
123164622
tae-r.2
for
123148994
tae-r.2
for
123088640
hvu-r.1
for
123413444
sbi-r.1
for
8066859
bdi-r.1
for
100842002
cre-r.1
for
CHLRE_10g433000v5


Ortholog ID: 10135
Species ath bra bna bna ghi ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol EDD1 LOC103830664 LOC106405545 LOC106353665 LOC107937450 LOC121224102 LOC107926326 LOC102624803 LOC100787365 LOC100246137 LOC7486786 LOC25500059 LOC101256217 LOC102601379 LOC107830076 LOC107811104 LOC4339847 LOC103638191 LOC123164622 LOC123148994 LOC123088640 LOC123413444 LOC8066859 LOC100842002 CHLRE_10g433000v5
Function* glycine-tRNA ligase glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2-like glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2-like glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 glycine--tRNA ligase, chloroplastic/mitochondrial 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi03060 Protein export 2
ghi00906 Carotenoid biosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 5
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 5
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 7
sly00500 Starch and sucrose metabolism 2
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00340 Histidine metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03440 Homologous recombination 2
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03440 Homologous recombination 2
nta00230 Purine metabolism 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 12
osa01240 Biosynthesis of cofactors 3
osa00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03018 RNA degradation 3
tae00270 Cysteine and methionine metabolism 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 7
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 8
cre00970 Aminoacyl-tRNA biosynthesis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 823966 103830664 106405545 106353665 107937450 121224102 107926326 102624803 100787365 100246137 7486786 25500059 101256217 102601379 107830076 107811104 4339847 103638191 123164622 123148994 123088640 123413444 8066859 100842002 5728041
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