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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PDE312   Nucleic acid-binding, OB-fold-like protein 
 ath-u.5   PDE312   Nucleic acid-binding, OB-fold-like protein 
 ath-r.7   PDE312   Nucleic acid-binding, OB-fold-like protein 
 ath-e.2   PDE312   Nucleic acid-binding, OB-fold-like protein 
 ath-m.4.bio   PDE312   Nucleic acid-binding, OB-fold-like protein 
 ath-m.4.hor   PDE312   Nucleic acid-binding, OB-fold-like protein 
 ath-m.4.lig   PDE312   Nucleic acid-binding, OB-fold-like protein 
 ath-m.4.str   PDE312   Nucleic acid-binding, OB-fold-like protein 
 ath-m.4.tis   PDE312   Nucleic acid-binding, OB-fold-like protein 
 bra-r.6   103874673   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 bna-r.1   106415569   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 bna-r.1   106376558   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 ghi-r.1   121232058   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 ghi-r.1   121219329   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 cit-r.1   102625535   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 gma-u.5   100783002   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 gma-u.5   100775818   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 vvi-u.5   100264639   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 ppo-u.5   7463104   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 mtr-u.5   25489495   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 sly-u.5   CIP5   CONSTANS interacting protein 5 
 sot-r.1   102591466   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 nta-r.1   107780559   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 nta-r.1   107787150   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10-like 
 osa-u.5   4325010   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 zma-u.5   100382312   Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 tae-r.2   123067688   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 tae-r.2   123057072   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 tae-r.2   123080016   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 hvu-r.1   123442022   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 sbi-r.1   8056124   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 bdi-r.1   100821290   protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 
 cre-r.1   CHLRE_07g348500v5   uncharacterized protein 

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Top 50 coexpressed genes to PDE312 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDE312 (ath-m.9 coexpression data)

CoexMap"824009"


athPDE312 | Entrez gene ID : 824009      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0000427 [list] [network] plastid-encoded plastid RNA polymerase complex  (12 genes)  IEA  
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003723 [list] [network] RNA binding  (1764 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078259.1 [sequence] [blastp]
NP_190419.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  cysk_nucl 1,  mito 1  (predict for NP_001078259.1)
chlo 9,  nucl 1  (predict for NP_190419.3)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001078259.1)
chlo 7  (predict for NP_190419.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PDE312
ath-u.5
for
PDE312
ath-r.7
for
PDE312
ath-e.2
for
PDE312
ath-m.4.bio
for
PDE312
ath-m.4.hor
for
PDE312
ath-m.4.lig
for
PDE312
ath-m.4.str
for
PDE312
ath-m.4.tis
for
PDE312
bra-r.6
for
103874673
bna-r.1
for
106415569
bna-r.1
for
106376558
ghi-r.1
for
121232058
ghi-r.1
for
121219329
cit-r.1
for
102625535
gma-u.5
for
100783002
gma-u.5
for
100775818
vvi-u.5
for
100264639
ppo-u.5
for
7463104
mtr-u.5
for
25489495
sly-u.5
for
CIP5
sot-r.1
for
102591466
nta-r.1
for
107780559
nta-r.1
for
107787150
osa-u.5
for
4325010
zma-u.5
for
100382312
tae-r.2
for
123067688
tae-r.2
for
123057072
tae-r.2
for
123080016
hvu-r.1
for
123442022
sbi-r.1
for
8056124
bdi-r.1
for
100821290
cre-r.1
for
CHLRE_07g348500v5


Ortholog ID: 9525
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PDE312 LOC103874673 LOC106415569 LOC106376558 LOC121232058 LOC121219329 LOC102625535 LOC100783002 LOC100775818 LOC100264639 LOC7463104 LOC25489495 CIP5 LOC102591466 LOC107780559 LOC107787150 LOC4325010 LOC100382312 LOC123067688 LOC123057072 LOC123080016 LOC123442022 LOC8056124 LOC100821290 CHLRE_07g348500v5
Function* Nucleic acid-binding, OB-fold-like protein protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 CONSTANS interacting protein 5 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10-like protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00330 Arginine and proline metabolism 2
bna04626 Plant-pathogen interaction 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00240 Pyrimidine metabolism 2
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824009 103874673 106415569 106376558 121232058 121219329 102625535 100783002 100775818 100264639 7463104 25489495 778252 102591466 107780559 107787150 4325010 100382312 123067688 123057072 123080016 123442022 8056124 100821290 5718158
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