ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-u.5	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-r.7	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-e.2	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-m.4.bio	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-m.4.hor	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-m.4.lig	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-m.4.str	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-m.4.tis	AT3G54310	DNA-directed RNA polymerase subunit alpha
ath-u.5	AT2G38430	uncharacterized protein
bra-r.6	103865669	uncharacterized LOC103865669
bna-r.1	106438151	uncharacterized LOC106438151
ghi-r.1	107961900	uncharacterized LOC107961900
ghi-r.1	107892479	uncharacterized LOC107892479
vvi-u.5	100252715	uncharacterized LOC100252715
ppo-u.5	7469853	uncharacterized LOC7469853
ppo-u.5	18108223	uncharacterized LOC18108223
sly-u.5	101268176	uncharacterized LOC101268176
sot-r.1	102588836	uncharacterized LOC102588836
sot-r.1	102587765	uncharacterized LOC102587765
nta-r.1	107763629	uncharacterized LOC107763629
nta-r.1	107780488	uncharacterized LOC107780488
nta-r.1	107801463	uncharacterized LOC107801463
osa-u.5	4329429	uncharacterized LOC4329429
zma-u.5	109946040	uncharacterized LOC109946040
zma-u.5	100278525	uncharacterized LOC100278525
tae-r.2	123054430	uncharacterized LOC123054430
tae-r.2	123132400	uncharacterized LOC123132400
hvu-r.1	123401463	uncharacterized LOC123401463
sbi-r.1	110435088	uncharacterized LOC110435088
bdi-r.1	100821526	uncharacterized LOC100821526

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_190999.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10

(predict for NP_190999.1)

Subcellular
localization
TargetP

other 3, mito 3

(predict for NP_190999.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT3G54310	ath-u.5 for AT3G54310	ath-r.7 for AT3G54310	ath-e.2 for AT3G54310	ath-m.4.bio for AT3G54310	ath-m.4.hor for AT3G54310	ath-m.4.lig for AT3G54310	ath-m.4.str for AT3G54310	ath-m.4.tis for AT3G54310	ath-u.5 for AT2G38430	bra-r.6 for 103865669	bna-r.1 for 106438151	ghi-r.1 for 107961900	ghi-r.1 for 107892479	vvi-u.5 for 100252715	ppo-u.5 for 7469853	ppo-u.5 for 18108223	sly-u.5 for 101268176	sot-r.1 for 102588836	sot-r.1 for 102587765	nta-r.1 for 107763629	nta-r.1 for 107780488	nta-r.1 for 107801463	osa-u.5 for 4329429	zma-u.5 for 109946040	zma-u.5 for 100278525	tae-r.2 for 123054430	tae-r.2 for 123132400	hvu-r.1 for 123401463	sbi-r.1 for 110435088	bdi-r.1 for 100821526

Ortholog

Ortholog ID: 2457

Species

ath

bra

bna

ghi

cit

vvi

ppo

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

DNA-directed RNA polymerase subunit alpha

uncharacterized protein

uncharacterized LOC103865669

uncharacterized LOC106438151

uncharacterized LOC107961900

uncharacterized LOC107892479

uncharacterized LOC102617183

uncharacterized LOC100252715

uncharacterized LOC7469853

uncharacterized LOC18108223

uncharacterized LOC101268176

uncharacterized LOC102587213

uncharacterized LOC102584096

uncharacterized LOC107780488

uncharacterized LOC107801463

uncharacterized LOC4329429

uncharacterized LOC109946040

uncharacterized LOC100278525

uncharacterized LOC123143966

uncharacterized LOC123401463

uncharacterized LOC110435088

uncharacterized LOC100821526

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	2
ath04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00020	Citrate cycle (TCA cycle)	3
bra01200	Carbon metabolism	3
bra00640	Propanoate metabolism	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00260	Glycine, serine and threonine metabolism	4
ppo01200	Carbon metabolism	4
ppo00630	Glyoxylate and dicarboxylate metabolism	3
ppo00670	One carbon pool by folate	3
ppo00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	4
nta00510	N-Glycan biosynthesis	3
nta00513	Various types of N-glycan biosynthesis	3
nta04141	Protein processing in endoplasmic reticulum	3
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	3
tae00730	Thiamine metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00904	Diterpenoid biosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

824598

818424

103865669

106438151

107961900

107892479

102617183

100252715

7469853

18108223

101268176

102587213

102584096

107780488

107801463

4329429

109946040

100278525

123143966

123401463

110435088

100821526

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT3G54310 (ath-m.9 coexpression data)

Top 50 enrichment test to AT3G54310 (ath-m.9 coexpression data)


Species	ath	bra	bna	ghi	vvi	ppo	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	gma	cit	mtr
Paralog	10	1	1	2	1	2	1	2	3	1	2	2	1	1	1	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G54310 (ath-m.9 coexpression data)

Top 50 enrichment test to AT3G54310 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**