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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TPC1   two-pore channel 1 
 ath-u.5   TPC1   two-pore channel 1 
 ath-r.7   TPC1   two-pore channel 1 
 ath-e.2   TPC1   two-pore channel 1 
 ath-m.4.bio   TPC1   two-pore channel 1 
 ath-m.4.hor   TPC1   two-pore channel 1 
 ath-m.4.lig   TPC1   two-pore channel 1 
 ath-m.4.str   TPC1   two-pore channel 1 
 ath-m.4.tis   TPC1   two-pore channel 1 
 bra-r.6   103858693   two pore calcium channel protein 1 
 bra-r.6   103846557   two pore calcium channel protein 1 
 bna-r.1   106347611   two pore calcium channel protein 1 
 bna-r.1   106377578   two pore calcium channel protein 1 
 bna-r.1   106435132   two pore calcium channel protein 1-like 
 ghi-r.1   107886775   two pore calcium channel protein 1 
 cit-r.1   102609722   two pore calcium channel protein 1 
 gma-u.5   100819307   two pore calcium channel protein 1 
 gma-u.5   100806160   two pore calcium channel protein 1B 
 vvi-u.5   TPC1   two pore channel 1 
 ppo-u.5   18104631   two pore calcium channel protein 1 
 mtr-u.5   25487660   two pore calcium channel protein 1 
 sly-u.5   101244201   two pore calcium channel protein 1B 
 sot-r.1   102594366   two pore calcium channel protein 1B 
 nta-r.1   107792180   two pore calcium channel protein 1B-like 
 nta-r.1   107819477   two pore calcium channel protein 1B 
 nta-r.1   107832813   two pore calcium channel protein 1A-like 
 osa-u.5   4325272   two pore calcium channel protein 1-like 
 zma-u.5   778433   uncharacterized LOC778433 
 tae-r.2   543074   two pore calcium channel protein 1-like 
 tae-r.2   123078987   two pore calcium channel protein 1-like 
 tae-r.2   123061888   two pore calcium channel protein 1-like 
 hvu-r.1   123444102   two pore calcium channel protein 1 
 sbi-r.1   8061863   two pore calcium channel protein 1 
 bdi-r.1   100836769   two pore calcium channel protein 1 
 cre-r.1   CHLRE_16g667451v5   uncharacterized protein 

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Top 50 coexpressed genes to TPC1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TPC1 (ath-m.9 coexpression data)

CoexMap"825655"


athTPC1 | Entrez gene ID : 825655      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 1 1 2 1 1 1 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0080141 [list] [network] regulation of jasmonic acid biosynthetic process  (6 genes)  IMP  
GO:0006816 [list] [network] calcium ion transport  (56 genes)  IC IMP  
GO:0019722 [list] [network] calcium-mediated signaling  (83 genes)  IMP  
GO:0009845 [list] [network] seed germination  (111 genes)  IMP  
GO:0010119 [list] [network] regulation of stomatal movement  (113 genes)  IMP  
GO CC
GO:0005774 [list] [network] vacuolar membrane  (164 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA IDA  
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  TAS  
GO MF
GO:0005245 [list] [network] voltage-gated calcium channel activity  (1 genes)  IGI ISS  
GO:0005262 [list] [network] calcium channel activity  (33 genes)  IGI IMP ISS  
GO:0005509 [list] [network] calcium ion binding  (158 genes)  IEA  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
Protein NP_567258.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 8,  cyto 1,  vacu 1,  pero 1,  cyto_pero 1  (predict for NP_567258.1)
Subcellular
localization
TargetP
other 9  (predict for NP_567258.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TPC1
ath-u.5
for
TPC1
ath-r.7
for
TPC1
ath-e.2
for
TPC1
ath-m.4.bio
for
TPC1
ath-m.4.hor
for
TPC1
ath-m.4.lig
for
TPC1
ath-m.4.str
for
TPC1
ath-m.4.tis
for
TPC1
bra-r.6
for
103858693
bra-r.6
for
103846557
bna-r.1
for
106347611
bna-r.1
for
106377578
bna-r.1
for
106435132
ghi-r.1
for
107886775
cit-r.1
for
102609722
gma-u.5
for
100819307
gma-u.5
for
100806160
vvi-u.5
for
TPC1
ppo-u.5
for
18104631
mtr-u.5
for
25487660
sly-u.5
for
101244201
sot-r.1
for
102594366
nta-r.1
for
107792180
nta-r.1
for
107819477
nta-r.1
for
107832813
osa-u.5
for
4325272
zma-u.5
for
778433
tae-r.2
for
543074
tae-r.2
for
123078987
tae-r.2
for
123061888
hvu-r.1
for
123444102
sbi-r.1
for
8061863
bdi-r.1
for
100836769
cre-r.1
for
CHLRE_16g667451v5


Ortholog ID: 7266
Species ath bra bra bna bna bna ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol TPC1 LOC103858693 LOC103846557 LOC106347611 LOC106435132 LOC106442032 LOC107886775 LOC102609722 LOC100819307 LOC100806160 TPC1 LOC18104631 LOC25487660 LOC101244201 LOC102594366 LOC107792180 LOC107770546 LOC107790859 LOC4325272 LOC778433 LOC543074 LOC123078987 LOC123061888 LOC123444102 LOC8061863 LOC100836769 CHLRE_16g667451v5
Function* two-pore channel 1 two pore calcium channel protein 1 two pore calcium channel protein 1 two pore calcium channel protein 1 two pore calcium channel protein 1-like two pore calcium channel protein 1-like two pore calcium channel protein 1 two pore calcium channel protein 1 two pore calcium channel protein 1 two pore calcium channel protein 1B two pore channel 1 two pore calcium channel protein 1 two pore calcium channel protein 1 two pore calcium channel protein 1B two pore calcium channel protein 1B two pore calcium channel protein 1B-like two pore calcium channel protein 1A two pore calcium channel protein 1B-like two pore calcium channel protein 1-like uncharacterized LOC778433 two pore calcium channel protein 1-like two pore calcium channel protein 1-like two pore calcium channel protein 1-like two pore calcium channel protein 1 two pore calcium channel protein 1 two pore calcium channel protein 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 4
ath04145 Phagosome 4
ath04144 Endocytosis 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 4
bra04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 4
ghi00565 Ether lipid metabolism 4
ghi04144 Endocytosis 4
ghi02010 ABC transporters 2
ghi04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00561 Glycerolipid metabolism 2
vvi00564 Glycerophospholipid metabolism 2
vvi04626 Plant-pathogen interaction 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04517 IgSF CAM signaling 2
nta05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 4
tae00511 Other glycan degradation 4
tae00600 Sphingolipid metabolism 4
tae00053 Ascorbate and aldarate metabolism 3
tae00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 3
tae00511 Other glycan degradation 3
tae00531 Glycosaminoglycan degradation 3
tae00600 Sphingolipid metabolism 3
tae00604 Glycosphingolipid biosynthesis - ganglio series 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00052 Galactose metabolism 3
tae00511 Other glycan degradation 3
tae00531 Glycosaminoglycan degradation 3
tae00600 Sphingolipid metabolism 3
tae00604 Glycosphingolipid biosynthesis - ganglio series 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
sbi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825655 103858693 103846557 106347611 106435132 106442032 107886775 102609722 100819307 100806160 100233073 18104631 25487660 101244201 102594366 107792180 107770546 107790859 4325272 778433 543074 123078987 123061888 123444102 8061863 100836769 66056606
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