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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PDF2   protodermal factor 2 
 ath-u.5   PDF2   protodermal factor 2 
 ath-r.7   PDF2   protodermal factor 2 
 ath-e.2   PDF2   protodermal factor 2 
 ath-m.4.bio   PDF2   protodermal factor 2 
 ath-m.4.hor   PDF2   protodermal factor 2 
 ath-m.4.lig   PDF2   protodermal factor 2 
 ath-m.4.str   PDF2   protodermal factor 2 
 ath-m.4.tis   PDF2   protodermal factor 2 
 ath-u.5   ATML1   Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 
 ath-u.5   HDG2   homeodomain GLABROUS 2 
 bra-r.6   103859403   homeobox-leucine zipper protein MERISTEM L1 
 bra-r.6   103839805   homeobox-leucine zipper protein PROTODERMAL FACTOR 2 
 bna-r.1   111202195   homeobox-leucine zipper protein MERISTEM L1 
 bna-r.1   106438747   homeobox-leucine zipper protein PROTODERMAL FACTOR 2 
 bna-r.1   106420878   homeobox-leucine zipper protein MERISTEM L1 
 ghi-r.1   107897733   homeobox-leucine zipper protein HDG2 
 ghi-r.1   107887397   homeobox-leucine zipper protein HDG2 
 ghi-r.1   107901934   homeobox-leucine zipper protein MERISTEM L1 
 cit-r.1   102613029   homeobox-leucine zipper protein HDG2 
 cit-r.1   102631422   homeobox-leucine zipper protein MERISTEM L1-like 
 gma-u.5   100782240   homeobox-leucine zipper protein MERISTEM L1 
 gma-u.5   100782260   homeobox-leucine zipper protein HDG2 
 gma-u.5   100790101   homeobox-leucine zipper protein HDG2 
 vvi-u.5   100264009   homeobox-leucine zipper protein MERISTEM L1 
 vvi-u.5   100261842   homeobox-leucine zipper protein HDG2 
 ppo-u.5   7462050   homeobox-leucine zipper protein HDG2 
 ppo-u.5   7489907   homeobox-leucine zipper protein HDG2 
 mtr-u.5   11441377   homeobox-leucine zipper protein HDG2 
 mtr-u.5   11417538   homeobox-leucine zipper protein HDG2 
 sly-u.5   101259395   homeobox-leucine zipper protein PROTODERMAL FACTOR 2 
 sly-u.5   101265620   homeobox-leucine zipper protein MERISTEM L1-like 
 sot-r.1   102595563   homeobox-leucine zipper protein MERISTEM L1 
 sot-r.1   102591747   homeobox-leucine zipper protein MERISTEM L1-like 
 nta-r.1   107789652   homeobox-leucine zipper protein MERISTEM L1 
 nta-r.1   107766155   homeobox-leucine zipper protein MERISTEM L1 
 nta-r.1   107773019   homeobox-leucine zipper protein HDG2-like 
 osa-u.5   4337074   homeobox-leucine zipper protein ROC2-like 
 osa-u.5   4344614   homeobox-leucine zipper protein ROC7-like 
 osa-u.5   4344832   homeobox-leucine zipper protein ROC1-like 
 zma-u.5   100383453   Homeodomain leucine zipper family IV protein 
 zma-u.5   103641332   homeobox-leucine zipper protein ROC7 
 zma-u.5   542010   outer cell layer5a 
 tae-r.2   123190512   homeobox-leucine zipper protein ROC2 
 tae-r.2   123164353   homeobox-leucine zipper protein ROC7 
 tae-r.2   123046820   homeobox-leucine zipper protein ROC2 
 hvu-r.1   123427922   homeobox-leucine zipper protein ROC2-like 
 hvu-r.1   123407806   homeobox-leucine zipper protein ROC7-like 
 sbi-r.1   8071117   homeobox-leucine zipper protein ROC1 
 sbi-r.1   8067798   homeobox-leucine zipper protein ROC7 
 sbi-r.1   8066825   homeobox-leucine zipper protein ROC2 
 bdi-r.1   100829867   homeobox-leucine zipper protein ROC2 
 bdi-r.1   100838099   homeobox-leucine zipper protein ROC7 
 bdi-r.1   100843786   homeobox-leucine zipper protein ROC1 

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Top 50 coexpressed genes to PDF2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PDF2 (ath-m.9 coexpression data)

CoexMap"825828"


athPDF2 | Entrez gene ID : 825828      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 3 3 2 3 2 2 2 2 2 3 3 3 3 2 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048497 [list] [network] maintenance of floral organ identity  (8 genes)  IGI IMP  
GO:2000033 [list] [network] regulation of seed dormancy process  (14 genes)  IEP  
GO:0048825 [list] [network] cotyledon development  (61 genes)  IGI  
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  IEP  
GO:0009845 [list] [network] seed germination  (111 genes)  IMP  
GO:0090627 [list] [network] plant epidermal cell differentiation  (198 genes)  IMP  
GO:0030154 [list] [network] cell differentiation  (627 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (47 genes)  IEA  
GO:0008289 [list] [network] lipid binding  (245 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001329475.1 [sequence] [blastp]
NP_567274.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  chlo 1,  vacu 1  (predict for NP_001329475.1)
nucl 9,  chlo 1,  vacu 1  (predict for NP_567274.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001329475.1)
other 8  (predict for NP_567274.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PDF2
ath-u.5
for
PDF2
ath-r.7
for
PDF2
ath-e.2
for
PDF2
ath-m.4.bio
for
PDF2
ath-m.4.hor
for
PDF2
ath-m.4.lig
for
PDF2
ath-m.4.str
for
PDF2
ath-m.4.tis
for
PDF2
ath-u.5
for
ATML1
ath-u.5
for
HDG2
bra-r.6
for
103859403
bra-r.6
for
103839805
bna-r.1
for
111202195
bna-r.1
for
106438747
bna-r.1
for
106420878
ghi-r.1
for
107897733
ghi-r.1
for
107887397
ghi-r.1
for
107901934
cit-r.1
for
102613029
cit-r.1
for
102631422
gma-u.5
for
100782240
gma-u.5
for
100782260
gma-u.5
for
100790101
vvi-u.5
for
100264009
vvi-u.5
for
100261842
ppo-u.5
for
7462050
ppo-u.5
for
7489907
mtr-u.5
for
11441377
mtr-u.5
for
11417538
sly-u.5
for
101259395
sly-u.5
for
101265620
sot-r.1
for
102595563
sot-r.1
for
102591747
nta-r.1
for
107789652
nta-r.1
for
107766155
nta-r.1
for
107773019
osa-u.5
for
4337074
osa-u.5
for
4344614
osa-u.5
for
4344832
zma-u.5
for
100383453
zma-u.5
for
103641332
zma-u.5
for
542010
tae-r.2
for
123190512
tae-r.2
for
123164353
tae-r.2
for
123046820
hvu-r.1
for
123427922
hvu-r.1
for
123407806
sbi-r.1
for
8071117
sbi-r.1
for
8067798
sbi-r.1
for
8066825
bdi-r.1
for
100829867
bdi-r.1
for
100838099
bdi-r.1
for
100843786


Ortholog ID: 1242
Species ath ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi
Symbol PDF2 ATML1 HDG2 LOC103839805 LOC103843620 LOC106415376 LOC106411016 LOC106371077 LOC107887397 LOC107937865 LOC107946330 LOC102613029 LOC102631422 LOC100790101 LOC100797992 LOC100809556 LOC100264009 LOC100261842 LOC7462050 LOC7489907 LOC7458546 LOC11441377 LOC11417538 LOC101259395 LOC101256132 LOC102591747 LOC102586817 LOC107826459 LOC107785796 LOC107806765 LOC4337074 LOC4344614 LOC4344832 LOC542010 LOC100279217 LOC118475029 LOC123046820 LOC123161615 LOC123054665 LOC123427922 LOC123407806 LOC8071117 LOC8067798 LOC8066825 LOC100829867 LOC100838099 LOC100843786
Function* protodermal factor 2 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein homeodomain GLABROUS 2 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein MERISTEM L1-like homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein MERISTEM L1 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein MERISTEM L1 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein HDG2 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein MERISTEM L1 homeobox-leucine zipper protein MERISTEM L1-like homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein PROTODERMAL FACTOR 2 homeobox-leucine zipper protein MERISTEM L1 homeobox-leucine zipper protein MERISTEM L1 homeobox-leucine zipper protein ROC2-like homeobox-leucine zipper protein ROC7-like homeobox-leucine zipper protein ROC1-like outer cell layer5a uncharacterized LOC100279217 homeobox-leucine zipper protein ROC1-like homeobox-leucine zipper protein ROC2 homeobox-leucine zipper protein ROC7 homeobox-leucine zipper protein ROC2 homeobox-leucine zipper protein ROC2-like homeobox-leucine zipper protein ROC7-like homeobox-leucine zipper protein ROC1 homeobox-leucine zipper protein ROC7 homeobox-leucine zipper protein ROC2 homeobox-leucine zipper protein ROC2 homeobox-leucine zipper protein ROC7 homeobox-leucine zipper protein ROC1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00062 Fatty acid elongation 4
ath04626 Plant-pathogen interaction 4
ath02010 ABC transporters 4
ath00561 Glycerolipid metabolism 2
ath00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00062 Fatty acid elongation 4
ath04626 Plant-pathogen interaction 4
ath02010 ABC transporters 4
ath00561 Glycerolipid metabolism 2
ath00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 4
ath00062 Fatty acid elongation 2
ath04626 Plant-pathogen interaction 2
ath04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 6
bra00062 Fatty acid elongation 4
bra04626 Plant-pathogen interaction 4
bra04981 Folate transport and metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra02010 ABC transporters 2
bra04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 4
gma04981 Folate transport and metabolism 4
gma00062 Fatty acid elongation 3
gma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma02010 ABC transporters 3
gma04981 Folate transport and metabolism 3
gma00062 Fatty acid elongation 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00062 Fatty acid elongation 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00073 Cutin, suberine and wax biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00073 Cutin, suberine and wax biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00062 Fatty acid elongation 3
mtr04626 Plant-pathogen interaction 3
mtr02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 3
sly02010 ABC transporters 3
sly00062 Fatty acid elongation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00062 Fatty acid elongation 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00062 Fatty acid elongation 3
sot04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00062 Fatty acid elongation 4
tae04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu02010 ABC transporters 2
hvu04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu02010 ABC transporters 2
hvu04981 Folate transport and metabolism 2
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 4
bdi04626 Plant-pathogen interaction 4
bdi02010 ABC transporters 3
bdi04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 3
bdi03040 Spliceosome 2
bdi00062 Fatty acid elongation 2
bdi02010 ABC transporters 2
bdi04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00062 Fatty acid elongation 6
bdi04626 Plant-pathogen interaction 6
bdi02010 ABC transporters 3
bdi04981 Folate transport and metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825828 828263 839256 103839805 103843620 106415376 106411016 106371077 107887397 107937865 107946330 102613029 102631422 100790101 100797992 100809556 100264009 100261842 7462050 7489907 7458546 11441377 11417538 101259395 101256132 102591747 102586817 107826459 107785796 107806765 4337074 4344614 4344832 542010 100279217 118475029 123046820 123161615 123054665 123427922 123407806 8071117 8067798 8066825 100829867 100838099 100843786
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