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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 ath-u.5   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 ath-r.7   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 ath-e.2   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 ath-m.4.bio   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 ath-m.4.hor   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 ath-m.4.lig   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 ath-m.4.str   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 ath-m.4.tis   AT4G09890   mediator of RNA polymerase II transcription subunit, putative (DUF3511) 
 bra-r.6   103838879   uncharacterized LOC103838879 
 bna-r.1   106359697   uncharacterized LOC106359697 
 bna-r.1   BNAC09G24800D   uncharacterized BNAC09G24800D 
 cit-r.1   107174785   hypothetical protein 
 gma-u.5   112999761   uncharacterized LOC112999761 
 gma-u.5   100776380   uncharacterized LOC100776380 
 vvi-u.5   100854843   uncharacterized LOC100854843 
 vvi-u.5   104879927   uncharacterized LOC104879927 
 ppo-u.5   7469242   uncharacterized LOC7469242 
 mtr-u.5   11408542   uncharacterized LOC11408542 
 osa-u.5   4341885   uncharacterized LOC4341885 
 zma-u.5   100276361   uncharacterized LOC100276361 
 tae-r.2   123168359   uncharacterized LOC123168359 
 tae-r.2   123161322   uncharacterized LOC123161322 
 tae-r.2   123148911   uncharacterized LOC123148911 
 hvu-r.1   123411612   uncharacterized LOC123411612 
 sbi-r.1   8063772   uncharacterized LOC8063772 
 bdi-r.1   100826521   uncharacterized LOC100826521 

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Top 50 coexpressed genes to AT4G09890 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G09890 (ath-m.9 coexpression data)

CoexMap"826579"


athAT4G09890 | Entrez gene ID : 826579      
Species ath bra bna cit gma vvi ppo mtr osa zma tae hvu sbi bdi sot sly ghi cre nta
Paralog 9 1 2 1 2 2 1 1 1 1 3 1 1 1 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_192727.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_192727.1)
Subcellular
localization
TargetP
other 8  (predict for NP_192727.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT4G09890
ath-u.5
for
AT4G09890
ath-r.7
for
AT4G09890
ath-e.2
for
AT4G09890
ath-m.4.bio
for
AT4G09890
ath-m.4.hor
for
AT4G09890
ath-m.4.lig
for
AT4G09890
ath-m.4.str
for
AT4G09890
ath-m.4.tis
for
AT4G09890
bra-r.6
for
103838879
bna-r.1
for
106359697
bna-r.1
for
BNAC09G24800D
cit-r.1
for
107174785
gma-u.5
for
112999761
gma-u.5
for
100776380
vvi-u.5
for
100854843
vvi-u.5
for
104879927
ppo-u.5
for
7469242
mtr-u.5
for
11408542
osa-u.5
for
4341885
zma-u.5
for
100276361
tae-r.2
for
123168359
tae-r.2
for
123161322
tae-r.2
for
123148911
hvu-r.1
for
123411612
sbi-r.1
for
8063772
bdi-r.1
for
100826521


Ortholog ID: 11981
Species ath bra bna bna cit gma gma vvi vvi ppo mtr osa zma tae tae tae hvu sbi bdi
Symbol AT4G09890 LOC103838879 LOC106359697 BNAC09G24800D LOC107174785 LOC112999761 LOC100527753 LOC100854843 LOC104879927 LOC7469242 LOC11408542 LOC4341885 LOC100276361 LOC123168359 LOC123161322 LOC123148911 LOC123411612 LOC8063772 LOC100826521
Function* mediator of RNA polymerase II transcription subunit, putative (DUF3511) uncharacterized LOC103838879 uncharacterized LOC106359697 uncharacterized BNAC09G24800D hypothetical protein uncharacterized LOC112999761 uncharacterized LOC100527753 uncharacterized LOC100854843 uncharacterized LOC104879927 uncharacterized LOC7469242 uncharacterized LOC11408542 uncharacterized LOC4341885 uncharacterized LOC100276361 uncharacterized LOC123168359 uncharacterized LOC123161322 uncharacterized LOC123148911 uncharacterized LOC123411612 uncharacterized LOC8063772 uncharacterized LOC100826521
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00250 Alanine, aspartate and glutamate metabolism 2
gma00410 beta-Alanine metabolism 2
gma00430 Taurine and hypotaurine metabolism 2
gma00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 3
bdi00940 Phenylpropanoid biosynthesis 3
bdi00670 One carbon pool by folate 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00941 Flavonoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826579 103838879 106359697 106394400 107174785 112999761 100527753 100854843 104879927 7469242 11408542 4341885 100276361 123168359 123161322 123148911 123411612 8063772 100826521
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