ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.9	AT4G13690	RNA-binding protein
ath-u.5	AT4G13690	RNA-binding protein
ath-r.7	AT4G13690	RNA-binding protein
ath-e.2	AT4G13690	RNA-binding protein
ath-m.4.bio	AT4G13690	RNA-binding protein
ath-m.4.hor	AT4G13690	RNA-binding protein
ath-m.4.lig	AT4G13690	RNA-binding protein
ath-m.4.str	AT4G13690	RNA-binding protein
ath-m.4.tis	AT4G13690	RNA-binding protein
bra-r.6	103863610	uncharacterized LOC103863610
ghi-r.1	107917551	uncharacterized LOC107917551
ghi-r.1	107892973	uncharacterized LOC107892973
gma-u.5	102659661	uncharacterized LOC102659661
gma-u.5	100776554	uncharacterized LOC100776554
ppo-u.5	7478285	uncharacterized LOC7478285
mtr-u.5	11410238	uncharacterized LOC11410238
sly-u.5	101258935	uncharacterized LOC101258935
sot-r.1	102603403	uncharacterized LOC102603403
nta-r.1	107794539	uncharacterized LOC107794539
nta-r.1	107786208	uncharacterized LOC107786208
zma-u.5	103643463	uncharacterized LOC103643463
cre-r.1	CHLRE_06g266550v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_193105.2 [sequence] [blastp]

Subcellular
localization
wolf

mito 4, cyto 3, nucl 2, chlo 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for NP_193105.2)

Subcellular
localization
TargetP

chlo 6

(predict for NP_193105.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT4G13690	ath-u.5 for AT4G13690	ath-r.7 for AT4G13690	ath-e.2 for AT4G13690	ath-m.4.bio for AT4G13690	ath-m.4.hor for AT4G13690	ath-m.4.lig for AT4G13690	ath-m.4.str for AT4G13690	ath-m.4.tis for AT4G13690	bra-r.6 for 103863610	ghi-r.1 for 107917551	ghi-r.1 for 107892973	gma-u.5 for 102659661	gma-u.5 for 100776554	ppo-u.5 for 7478285	mtr-u.5 for 11410238	sly-u.5 for 101258935	sot-r.1 for 102603403	nta-r.1 for 107794539	nta-r.1 for 107786208	zma-u.5 for 103643463	cre-r.1 for CHLRE_06g266550v5

Ortholog

Ortholog ID: 11359

Species

ath

bra

ghi

gma

ppo

mtr

sly

sot

nta

zma

cre

Symbol

Function^*

RNA-binding protein

uncharacterized LOC103863610

uncharacterized LOC107917551

uncharacterized LOC107892973

uncharacterized LOC102659661

uncharacterized LOC100776554

uncharacterized LOC7478285

uncharacterized LOC11410238

uncharacterized LOC101258935

uncharacterized LOC102603403

uncharacterized LOC107794539

uncharacterized LOC107786208

uncharacterized LOC103643463

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03440	Homologous recombination	5
ath03460	Fanconi anemia pathway	4
ath03030	DNA replication	3
ath03420	Nucleotide excision repair	3
ath03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi00480	Glutathione metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	5
ghi00230	Purine metabolism	2
ghi00240	Pyrimidine metabolism	2
ghi00480	Glutathione metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00240	Pyrimidine metabolism	3
gma01232	Nucleotide metabolism	3
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	5
gma03440	Homologous recombination	3
gma00230	Purine metabolism	2
gma00240	Pyrimidine metabolism	2
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03030	DNA replication	8
ppo03410	Base excision repair	2
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03060	Protein export	2
sly03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3

Expression

Expression pattern

Entrez Gene ID^*

827003

103863610

107917551

107892973

102659661

100776554

7478285

11410238

101258935

102603403

107794539

107786208

103643463

5721931

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT4G13690 (ath-m.9 coexpression data)

Top 50 enrichment test to AT4G13690 (ath-m.9 coexpression data)


Species	ath	bra	ghi	gma	ppo	mtr	sly	sot	nta	zma	cre	sbi	osa	cit	tae	bna	hvu	vvi	bdi
Paralog	9	1	2	2	1	1	1	1	2	1	1	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT4G13690 (ath-m.9 coexpression data)

Top 50 enrichment test to AT4G13690 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**