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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 ath-u.5   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 ath-r.7   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 ath-e.2   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 ath-m.4.bio   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 ath-m.4.hor   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 ath-m.4.lig   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 ath-m.4.str   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 ath-m.4.tis   FAR1   FRS (FAR1 Related Sequences) transcription factor family 
 bra-r.6   103871343   protein FAR-RED IMPAIRED RESPONSE 1 
 bna-r.1   106411379   protein FAR-RED IMPAIRED RESPONSE 1 
 bna-r.1   106406253   protein FAR-RED IMPAIRED RESPONSE 1 
 bna-r.1   125597426   protein FAR-RED IMPAIRED RESPONSE 1-like 
 ghi-r.1   107912663   protein FAR-RED IMPAIRED RESPONSE 1 
 ghi-r.1   107951941   protein FAR-RED IMPAIRED RESPONSE 1 
 ghi-r.1   107922525   protein FAR-RED IMPAIRED RESPONSE 1 
 cit-r.1   102625461   protein FAR-RED IMPAIRED RESPONSE 1 
 cit-r.1   102621332   protein FAR1-RELATED SEQUENCE 1 
 gma-u.5   100792626   protein FAR-RED IMPAIRED RESPONSE 1 
 gma-u.5   100805377   protein FAR-RED IMPAIRED RESPONSE 1 
 gma-u.5   100814153   protein FAR-RED IMPAIRED RESPONSE 1 
 vvi-u.5   100251986   protein FAR-RED IMPAIRED RESPONSE 1 
 vvi-u.5   100262925   protein FAR-RED IMPAIRED RESPONSE 1 
 ppo-u.5   7495635   protein FAR-RED IMPAIRED RESPONSE 1 
 ppo-u.5   18097012   protein FAR-RED IMPAIRED RESPONSE 1 
 mtr-u.5   112416729   protein FAR-RED IMPAIRED RESPONSE 1 
 sly-u.5   101248454   protein FAR-RED IMPAIRED RESPONSE 1 
 sly-u.5   101258392   protein FAR-RED IMPAIRED RESPONSE 1 
 sot-r.1   102595976   protein FAR-RED IMPAIRED RESPONSE 1 
 sot-r.1   102605725   protein FAR-RED IMPAIRED RESPONSE 1 
 nta-r.1   107826696   protein FAR-RED IMPAIRED RESPONSE 1 
 nta-r.1   107814854   protein FAR-RED IMPAIRED RESPONSE 1 
 nta-r.1   107815231   protein FAR-RED IMPAIRED RESPONSE 1 

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Top 50 coexpressed genes to FAR1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FAR1 (ath-m.9 coexpression data)

CoexMap"827173"


athFAR1 | Entrez gene ID : 827173      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi cre tae zma osa bdi hvu
Paralog 9 1 3 3 2 3 2 2 1 2 2 3 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010018 [list] [network] far-red light signaling pathway  (5 genes)  IMP  
GO:0042753 [list] [network] positive regulation of circadian rhythm  (12 genes)  IMP  
GO:1900056 [list] [network] negative regulation of leaf senescence  (22 genes)  IMP  
GO:0010017 [list] [network] red or far-red light signaling pathway  (53 genes)  IMP  
GO:0010218 [list] [network] response to far red light  (57 genes)  IMP  
GO:0009639 [list] [network] response to red or far red light  (221 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001329443.1 [sequence] [blastp]
NP_001329444.1 [sequence] [blastp]
NP_001329445.1 [sequence] [blastp]
NP_001329446.1 [sequence] [blastp]
NP_567455.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001329443.1)
nucl 9  (predict for NP_001329444.1)
nucl 9  (predict for NP_001329445.1)
nucl 9  (predict for NP_001329446.1)
nucl 9  (predict for NP_567455.4)
Subcellular
localization
TargetP
other 9  (predict for NP_001329443.1)
other 9  (predict for NP_001329444.1)
other 9  (predict for NP_001329445.1)
other 9  (predict for NP_001329446.1)
other 9  (predict for NP_567455.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
FAR1
ath-u.5
for
FAR1
ath-r.7
for
FAR1
ath-e.2
for
FAR1
ath-m.4.bio
for
FAR1
ath-m.4.hor
for
FAR1
ath-m.4.lig
for
FAR1
ath-m.4.str
for
FAR1
ath-m.4.tis
for
FAR1
bra-r.6
for
103871343
bna-r.1
for
106411379
bna-r.1
for
106406253
bna-r.1
for
125597426
ghi-r.1
for
107912663
ghi-r.1
for
107951941
ghi-r.1
for
107922525
cit-r.1
for
102625461
cit-r.1
for
102621332
gma-u.5
for
100792626
gma-u.5
for
100805377
gma-u.5
for
100814153
vvi-u.5
for
100251986
vvi-u.5
for
100262925
ppo-u.5
for
7495635
ppo-u.5
for
18097012
mtr-u.5
for
112416729
sly-u.5
for
101248454
sly-u.5
for
101258392
sot-r.1
for
102595976
sot-r.1
for
102605725
nta-r.1
for
107826696
nta-r.1
for
107814854
nta-r.1
for
107815231


Ortholog ID: 9015
Species ath bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta nta
Symbol FAR1 LOC103871343 LOC106411379 LOC106406253 LOC125597426 LOC107912663 LOC107951941 LOC107922525 LOC102625461 LOC102621332 LOC100792626 LOC100805377 LOC100814153 LOC100251986 LOC100262925 LOC7495635 LOC18097012 LOC112416729 LOC101248454 LOC101258392 LOC102595976 LOC102605725 LOC107826696 LOC107814854 LOC107815231
Function* FRS (FAR1 Related Sequences) transcription factor family protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1-like protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR1-RELATED SEQUENCE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1 protein FAR-RED IMPAIRED RESPONSE 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra00562 Inositol phosphate metabolism 2
bra04070 Phosphatidylinositol signaling system 2
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 5
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 4
ghi04070 Phosphatidylinositol signaling system 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 4
ghi04070 Phosphatidylinositol signaling system 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827173 103871343 106411379 106406253 125597426 107912663 107951941 107922525 102625461 102621332 100792626 100805377 100814153 100251986 100262925 7495635 18097012 112416729 101248454 101258392 102595976 102605725 107826696 107814854 107815231
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