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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ath-u.5   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ath-r.7   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ath-e.2   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ath-m.4.bio   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ath-m.4.hor   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ath-m.4.lig   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ath-m.4.str   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 ath-m.4.tis   AT4G24440   transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) 
 bra-r.6   103862092   transcription initiation factor IIA subunit 2 
 bra-r.6   103834905   transcription initiation factor IIA subunit 2 
 bna-r.1   106442013   transcription initiation factor IIA subunit 2 
 bna-r.1   106348930   transcription initiation factor IIA subunit 2-like 
 bna-r.1   106427363   transcription initiation factor IIA subunit 2-like 
 ghi-r.1   107905137   transcription initiation factor IIA subunit 2 
 ghi-r.1   107957838   transcription initiation factor IIA subunit 2 
 ghi-r.1   121229031   transcription initiation factor IIA subunit 2 
 cit-r.1   102608588   transcription initiation factor IIA subunit 2 
 gma-u.5   100814623   transcription initiation factor IIA subunit 2 
 gma-u.5   100810792   transcription initiation factor IIA subunit 2 
 vvi-u.5   100242052   transcription initiation factor IIA subunit 2-like 
 ppo-u.5   7490310   transcription initiation factor IIA subunit 2 
 mtr-u.5   11428884   transcription initiation factor IIA subunit 2 
 mtr-u.5   11419402   transcription initiation factor IIA subunit 2 
 sly-u.5   101250286   transcription initiation factor IIA subunit 2 
 sot-r.1   102583950   transcription initiation factor IIA subunit 2 
 nta-r.1   107807117   transcription initiation factor IIA subunit 2 
 nta-r.1   107806433   transcription initiation factor IIA subunit 2 
 osa-u.5   4323838   transcription initiation factor IIA subunit 2 
 osa-u.5   4337575   transcription initiation factor IIA subunit 2-like 
 zma-u.5   109944853   transcription initiation factor IIA subunit 2 
 zma-u.5   100286346   Transcription initiation factor IIA subunit 2 
 hvu-r.1   123438363   transcription initiation factor IIA subunit 2 
 hvu-r.1   123442981   transcription initiation factor IIA subunit 2-like 
 sbi-r.1   8074132   transcription initiation factor IIA subunit 2 
 sbi-r.1   8067879   transcription initiation factor IIA subunit 2 
 bdi-r.1   100828994   transcription initiation factor IIA subunit 2 
 bdi-r.1   100837665   uncharacterized LOC100837665 
 cre-r.1   CHLRE_10g424150v5   uncharacterized protein 

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Top 50 coexpressed genes to AT4G24440 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G24440 (ath-m.9 coexpression data)

CoexMap"828546"


athAT4G24440 | Entrez gene ID : 828546    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma hvu sbi bdi cre tae
Paralog 9 2 3 3 1 2 1 1 2 1 1 2 2 2 2 2 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_194175.1 [sequence] [blastp]
NP_849434.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 2,  nucl_plas 2,  cyto_plas 2  (predict for NP_194175.1)
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 2,  nucl_plas 2,  cyto_plas 2  (predict for NP_849434.1)
Subcellular
localization
TargetP
other 7  (predict for NP_194175.1)
other 7  (predict for NP_849434.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT4G24440
ath-u.5
for
AT4G24440
ath-r.7
for
AT4G24440
ath-e.2
for
AT4G24440
ath-m.4.bio
for
AT4G24440
ath-m.4.hor
for
AT4G24440
ath-m.4.lig
for
AT4G24440
ath-m.4.str
for
AT4G24440
ath-m.4.tis
for
AT4G24440
bra-r.6
for
103862092
bra-r.6
for
103834905
bna-r.1
for
106442013
bna-r.1
for
106348930
bna-r.1
for
106427363
ghi-r.1
for
107905137
ghi-r.1
for
107957838
ghi-r.1
for
121229031
cit-r.1
for
102608588
gma-u.5
for
100814623
gma-u.5
for
100810792
vvi-u.5
for
100242052
ppo-u.5
for
7490310
mtr-u.5
for
11428884
mtr-u.5
for
11419402
sly-u.5
for
101250286
sot-r.1
for
102583950
nta-r.1
for
107807117
nta-r.1
for
107806433
osa-u.5
for
4323838
osa-u.5
for
4337575
zma-u.5
for
109944853
zma-u.5
for
100286346
hvu-r.1
for
123438363
hvu-r.1
for
123442981
sbi-r.1
for
8074132
sbi-r.1
for
8067879
bdi-r.1
for
100828994
bdi-r.1
for
100837665
cre-r.1
for
CHLRE_10g424150v5


Ortholog ID: 3604
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta osa osa zma zma tae hvu hvu sbi sbi bdi bdi cre
Symbol AT4G24440 LOC103862092 LOC103834905 LOC106442013 LOC106394423 LOC106444604 LOC107905137 LOC107957838 LOC121217892 LOC102608588 LOC100814623 LOC100810792 LOC100242052 LOC7490310 LOC11428884 LOC11419402 LOC101250286 LOC102583950 LOC107807117 LOC107806433 LOC4323838 LOC4337575 LOC109944853 LOC100286346 LOC123080977 LOC123438363 LOC123442981 LOC8074132 LOC8067879 LOC100828994 LOC100837665 CHLRE_10g424150v5
Function* transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 Transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2-like transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 transcription initiation factor IIA subunit 2 uncharacterized LOC100837665 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 4
cit03022 Basal transcription factors 3
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03040 Spliceosome 3
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03022 Basal transcription factors 2
mtr03040 Spliceosome 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 3
nta03022 Basal transcription factors 2
nta03050 Proteasome 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03040 Spliceosome 3
nta03010 Ribosome 2
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma04141 Protein processing in endoplasmic reticulum 5
zma03040 Spliceosome 3
zma03420 Nucleotide excision repair 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
hvu03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 4
sbi03040 Spliceosome 2
sbi03022 Basal transcription factors 2
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828546 103862092 103834905 106442013 106394423 106444604 107905137 107957838 121217892 102608588 100814623 100810792 100242052 7490310 11428884 11419402 101250286 102583950 107807117 107806433 4323838 4337575 109944853 100286346 123080977 123438363 123442981 8074132 8067879 100828994 100837665 5728216
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