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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   NFD1   Ribosomal protein L21 
 ath-u.5   NFD1   Ribosomal protein L21 
 ath-r.7   NFD1   Ribosomal protein L21 
 ath-e.2   NFD1   Ribosomal protein L21 
 ath-m.4.bio   NFD1   Ribosomal protein L21 
 ath-m.4.hor   NFD1   Ribosomal protein L21 
 ath-m.4.lig   NFD1   Ribosomal protein L21 
 ath-m.4.str   NFD1   Ribosomal protein L21 
 ath-m.4.tis   NFD1   Ribosomal protein L21 
 ath-u.5   RPL21C   Ribosomal protein L21 
 bra-r.6   103862013   50S ribosomal protein L21, mitochondrial 
 bra-r.6   103852238   50S ribosomal protein L21, mitochondrial 
 bra-r.6   103833583   50S ribosomal protein L21, chloroplastic 
 bna-r.1   106434421   50S ribosomal protein L21, mitochondrial-like 
 bna-r.1   106424111   50S ribosomal protein L21, mitochondrial 
 bna-r.1   106418962   50S ribosomal protein L21, chloroplastic 
 ghi-r.1   107895347   50S ribosomal protein L21, mitochondrial 
 ghi-r.1   107901818   50S ribosomal protein L21, mitochondrial 
 ghi-r.1   107904880   50S ribosomal protein L21, chloroplastic 
 cit-r.1   102626544   50S ribosomal protein L21, mitochondrial 
 cit-r.1   102624292   50S ribosomal protein L21, chloroplastic 
 gma-u.5   100527321   uncharacterized LOC100527321 
 gma-u.5   100780480   50S ribosomal protein L21, mitochondrial 
 gma-u.5   100781947   50S ribosomal protein L21, mitochondrial 
 vvi-u.5   100255002   large ribosomal subunit protein bL21c 
 vvi-u.5   100245717   large ribosomal subunit protein bL21m 
 ppo-u.5   18104457   50S ribosomal protein L21, chloroplastic 
 ppo-u.5   7463126   50S ribosomal protein L21, mitochondrial 
 ppo-u.5   7467422   50S ribosomal protein L21, chloroplastic 
 mtr-u.5   25484971   50S ribosomal protein L21, chloroplastic 
 mtr-u.5   11429582   50S ribosomal protein L21, mitochondrial 
 sly-u.5   101250359   large ribosomal subunit protein bL21m 
 sly-u.5   101250811   large ribosomal subunit protein bL21c 
 sot-r.1   102595243   50S ribosomal protein L21, chloroplastic 
 sot-r.1   102590994   50S ribosomal protein L21, mitochondrial 
 nta-r.1   107817464   large ribosomal subunit protein bL21m-like 
 nta-r.1   107780584   large ribosomal subunit protein bL21m-like 
 nta-r.1   107781915   large ribosomal subunit protein bL21c 
 osa-u.5   4328932   large ribosomal subunit protein bL21c 
 osa-u.5   4339580   large ribosomal subunit protein bL21m 
 zma-u.5   100285347   50S ribosomal protein L21, chloroplastic-like 
 zma-u.5   100280871   50S ribosomal protein L21, chloroplastic-like 
 zma-u.5   100272779   50S ribosomal protein L21-like 
 tae-r.2   123137054   50S ribosomal protein L21, chloroplastic 
 tae-r.2   123127406   50S ribosomal protein L21, chloroplastic 
 tae-r.2   123144416   50S ribosomal protein L21, chloroplastic 
 hvu-r.1   123449844   50S ribosomal protein L21, mitochondrial-like 
 hvu-r.1   123402487   50S ribosomal protein L21, chloroplastic 
 sbi-r.1   8059054   50S ribosomal protein L21, chloroplastic 
 sbi-r.1   8074578   50S ribosomal protein L21, mitochondrial 
 bdi-r.1   100829900   50S ribosomal protein L21, mitochondrial 
 bdi-r.1   100839612   50S ribosomal protein L21, chloroplastic 
 cre-r.1   CHLRE_09g388550v5   uncharacterized protein 
 cre-r.1   CHLRE_06g299000v5   uncharacterized protein 

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Top 50 coexpressed genes to NFD1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NFD1 (ath-m.9 coexpression data)

CoexMap"829217"


athNFD1 | Entrez gene ID : 829217      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 2 3 2 3 2 2 2 3 2 3 3 2 2 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0000741 [list] [network] karyogamy  (31 genes)  IMP  
GO:0010197 [list] [network] polar nucleus fusion  (31 genes)  IMP  
GO:0009567 [list] [network] double fertilization forming a zygote and endosperm  (45 genes)  IMP  
GO:0009553 [list] [network] embryo sac development  (161 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
Protein NP_567861.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1  (predict for NP_567861.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_567861.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
NFD1
ath-u.5
for
NFD1
ath-r.7
for
NFD1
ath-e.2
for
NFD1
ath-m.4.bio
for
NFD1
ath-m.4.hor
for
NFD1
ath-m.4.lig
for
NFD1
ath-m.4.str
for
NFD1
ath-m.4.tis
for
NFD1
ath-u.5
for
RPL21C
bra-r.6
for
103862013
bra-r.6
for
103852238
bra-r.6
for
103833583
bna-r.1
for
106434421
bna-r.1
for
106424111
bna-r.1
for
106418962
ghi-r.1
for
107895347
ghi-r.1
for
107901818
ghi-r.1
for
107904880
cit-r.1
for
102626544
cit-r.1
for
102624292
gma-u.5
for
100527321
gma-u.5
for
100780480
gma-u.5
for
100781947
vvi-u.5
for
100255002
vvi-u.5
for
100245717
ppo-u.5
for
18104457
ppo-u.5
for
7463126
ppo-u.5
for
7467422
mtr-u.5
for
25484971
mtr-u.5
for
11429582
sly-u.5
for
101250359
sly-u.5
for
101250811
sot-r.1
for
102595243
sot-r.1
for
102590994
nta-r.1
for
107817464
nta-r.1
for
107780584
nta-r.1
for
107781915
osa-u.5
for
4328932
osa-u.5
for
4339580
zma-u.5
for
100285347
zma-u.5
for
100280871
zma-u.5
for
100272779
tae-r.2
for
123137054
tae-r.2
for
123127406
tae-r.2
for
123144416
hvu-r.1
for
123449844
hvu-r.1
for
123402487
sbi-r.1
for
8059054
sbi-r.1
for
8074578
bdi-r.1
for
100829900
bdi-r.1
for
100839612
cre-r.1
for
CHLRE_09g388550v5
cre-r.1
for
CHLRE_06g299000v5


Ortholog ID: 2291
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre cre
Symbol NFD1 RPL21C LOC103852238 LOC103833583 LOC103834649 LOC106418962 LOC106352926 LOC106375980 LOC107895347 LOC107901818 LOC107904880 LOC102626544 LOC102624292 LOC100780480 LOC100781947 LOC100795152 LOC100255002 LOC100245717 LOC18104457 LOC7463126 LOC7467422 LOC25484971 LOC11429582 LOC101250359 LOC101250811 LOC102595243 LOC102590994 LOC107781915 LOC107794729 LOC107830548 LOC4328932 LOC4339580 LOC100285347 LOC100280871 LOC100272779 LOC123137054 LOC123127406 LOC123183029 LOC123449844 LOC123402487 LOC8059054 LOC8074578 LOC100829900 LOC100839612 CHLRE_09g388550v5 CHLRE_06g299000v5
Function* Ribosomal protein L21 Ribosomal protein L21 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, mitochondrial putative 50S ribosomal protein L21, chloroplastic large ribosomal subunit protein bL21c large ribosomal subunit protein bL21m 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial large ribosomal subunit protein bL21m large ribosomal subunit protein bL21c 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial large ribosomal subunit protein bL21c large ribosomal subunit protein bL21m-like large ribosomal subunit protein bL21c-like large ribosomal subunit protein bL21c large ribosomal subunit protein bL21m 50S ribosomal protein L21, chloroplastic-like 50S ribosomal protein L21, chloroplastic-like 50S ribosomal protein L21-like 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, mitochondrial-like 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, chloroplastic 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, mitochondrial 50S ribosomal protein L21, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
bra04626 Plant-pathogen interaction 3
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna00030 Pentose phosphate pathway 2
bna00040 Pentose and glucuronate interconversions 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
bna03030 DNA replication 2
bna03430 Mismatch repair 2
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
ghi01240 Biosynthesis of cofactors 4
ghi00053 Ascorbate and aldarate metabolism 2
ghi00564 Glycerophospholipid metabolism 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03010 Ribosome 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 14
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 12
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 13
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 9
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 11
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829217 840472 103852238 103833583 103834649 106418962 106352926 106375980 107895347 107901818 107904880 102626544 102624292 100780480 100781947 100795152 100255002 100245717 18104457 7463126 7467422 25484971 11429582 101250359 101250811 102595243 102590994 107781915 107794729 107830548 4328932 4339580 100285347 100280871 100272779 123137054 123127406 123183029 123449844 123402487 8059054 8074578 100829900 100839612 5720032 5717004
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