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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RRTF1   redox responsive transcription factor 1 
 ath-u.5   RRTF1   redox responsive transcription factor 1 
 ath-r.7   RRTF1   redox responsive transcription factor 1 
 ath-e.2   RRTF1   redox responsive transcription factor 1 
 ath-m.4.bio   RRTF1   redox responsive transcription factor 1 
 ath-m.4.hor   RRTF1   redox responsive transcription factor 1 
 ath-m.4.lig   RRTF1   redox responsive transcription factor 1 
 ath-m.4.str   RRTF1   redox responsive transcription factor 1 
 ath-m.4.tis   RRTF1   redox responsive transcription factor 1 
 gma-u.5   100794381   ethylene-responsive transcription factor ERF109 
 gma-u.5   100820426   uncharacterized LOC100820426 
 vvi-u.5   100260566   ethylene-responsive transcription factor ERF109 
 ppo-u.5   18097788   ethylene-responsive transcription factor ERF109 
 ppo-u.5   7490035   ethylene-responsive transcription factor ERF109 
 mtr-u.5   11443959   ethylene-responsive transcription factor ERF109 
 mtr-u.5   11441424   ethylene-responsive transcription factor ERF109 
 sly-u.5   ERF-D4   ethylene response factor D.4 
 sly-u.5   ERF-D3   ethylene response factor D.3 
 osa-u.5   4345815   ethylene-responsive transcription factor ERF109 
 osa-u.5   4347266   ethylene-responsive transcription factor ERF109 
 zma-u.5   100280788   ethylene-responsive element binding protein 2 
 zma-u.5   103647485   ethylene-responsive transcription factor ERF109-like 
 zma-u.5   100283357   AP2 domain containing protein 

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Top 50 coexpressed genes to RRTF1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RRTF1 (ath-m.9 coexpression data)

CoexMap"829591"


athRRTF1 | Entrez gene ID : 829591      
Species ath gma vvi ppo mtr sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 9 2 1 2 2 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0062211 [list] [network] root regeneration  (4 genes)  IMP  
GO:0090357 [list] [network] regulation of L-tryptophan metabolic process  (6 genes)  IEP  
GO:0010928 [list] [network] regulation of auxin mediated signaling pathway  (48 genes)  IEP  
GO:0010087 [list] [network] phloem or xylem histogenesis  (125 genes)  IEP  
GO:0051301 [list] [network] cell division  (192 genes)  IEP  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_195167.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_195167.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for NP_195167.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RRTF1

.
ath-u.5
for
RRTF1

.
ath-r.7
for
RRTF1

.
ath-e.2
for
RRTF1

.
ath-m.4.bio
for
RRTF1

.
ath-m.4.hor
for
RRTF1

.
ath-m.4.lig
for
RRTF1

.
ath-m.4.str
for
RRTF1

.
ath-m.4.tis
for
RRTF1

.
gma-u.5
for
100794381

.
gma-u.5
for
100820426

.
vvi-u.5
for
100260566

.
ppo-u.5
for
18097788

.
ppo-u.5
for
7490035

.
mtr-u.5
for
11443959

.
mtr-u.5
for
11441424

.
sly-u.5
for
ERF-D4

.
sly-u.5
for
ERF-D3

.
osa-u.5
for
4345815

.
osa-u.5
for
4347266

.
zma-u.5
for
100280788

.
zma-u.5
for
103647485

.
zma-u.5
for
100283357

.


Ortholog ID: 1762
Species ath gma gma sly sly osa osa zma zma bra bra ppo mtr mtr tae tae ghi ghi bna bna sbi sbi sot sot cit cit bdi nta
Symbol RRTF1 LOC100794381 LOC100820426 ERF-D4 ERF-D3 LOC4347266 LOC4345815 LOC100280788 LOC100283357 LOC103834418 LOC103862348 LOC18097788 LOC11441424 LOC11444521 LOC123174921 LOC123174929 LOC107908908 LOC107927855 LOC125580552 LOC106356256 LOC8083217 LOC8083540 LOC102606090 LOC102598046 LOC102615840 LOC107178612 LOC100834335 LOC107771196
Function* redox responsive transcription factor 1 ethylene-responsive transcription factor ERF109 uncharacterized LOC100820426 ethylene response factor D.4 ethylene response factor D.3 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive element binding protein 2 AP2 domain containing protein ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00350 Tyrosine metabolism 2
bna00360 Phenylalanine metabolism 2
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829591 100794381 100820426 101246484 101267746 4347266 4345815 100280788 100283357 103834418 103862348 18097788 11441424 11444521 123174921 123174929 107908908 107927855 125580552 106356256 8083217 8083540 102606090 102598046 102615840 107178612 100834335 107771196
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