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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-u.5   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-r.7   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-e.2   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-m.4.bio   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-m.4.hor   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-m.4.lig   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-m.4.str   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-m.4.tis   AT4G38930   Ubiquitin fusion degradation UFD1 family protein 
 ath-u.5   UFD1   ubiquitin fusion degradation 1 
 ath-u.5   AT2G29070   Ubiquitin fusion degradation UFD1 family protein 
 bra-r.6   103842542   ubiquitin recognition factor in ER-associated degradation protein 1 
 bra-r.6   103864264   ubiquitin recognition factor in ER-associated degradation protein 1 
 bra-r.6   103864938   ubiquitin fusion degradation protein 1 homolog 
 bna-r.1   106446907   ubiquitin fusion degradation protein 1 homolog 
 bna-r.1   106446356   ubiquitin recognition factor in ER-associated degradation protein 1 
 bna-r.1   106420772   ubiquitin recognition factor in ER-associated degradation protein 1 
 ghi-r.1   107902026   ubiquitin fusion degradation protein 1 homolog 
 ghi-r.1   107927951   ubiquitin recognition factor in ER-associated degradation protein 1 
 ghi-r.1   107949091   ubiquitin fusion degradation protein 1 homolog 
 cit-r.1   102610628   uncharacterized LOC102610628 
 cit-r.1   102625489   uncharacterized LOC102625489 
 gma-u.5   100803896   ubiquitin fusion degradation protein 1 homolog 
 gma-u.5   100781066   ubiquitin fusion degradation protein 1 homolog 
 vvi-u.5   100258971   uncharacterized LOC100258971 
 ppo-u.5   7494294   uncharacterized LOC7494294 
 ppo-u.5   7485696   uncharacterized LOC7485696 
 mtr-u.5   11406565   ubiquitin fusion degradation protein 1 homolog 
 sly-u.5   101248524   ubiquitin fusion degradation protein 1 homolog 
 sot-r.1   102577706   ubiquitin fusion-degradation protein-like 
 sot-r.1   102601939   ubiquitin fusion degradation protein 1 homolog 
 nta-r.1   107774380   uncharacterized LOC107774380 
 nta-r.1   107786277   uncharacterized LOC107786277 
 nta-r.1   107782973   uncharacterized LOC107782973 
 osa-u.5   4336742   uncharacterized LOC4336742 
 osa-u.5   4328514   ubiquitin fusion degradation protein 1 homolog 
 zma-u.5   100282805   uncharacterized LOC100282805 
 zma-u.5   100282176   uncharacterized LOC100282176 
 tae-r.2   123190004   ubiquitin fusion degradation protein 1 homolog 
 tae-r.2   100415820   ubiquitin fusion degradation protein 1 homolog 
 tae-r.2   123132470   ubiquitin fusion degradation protein 1 homolog 
 hvu-r.1   123402228   ubiquitin fusion degradation protein 1 homolog 
 hvu-r.1   123427440   ubiquitin fusion degradation protein 1 homolog 
 sbi-r.1   8077631   ubiquitin fusion degradation protein 1 homolog 
 sbi-r.1   110436522   ubiquitin recognition factor in ER-associated degradation protein 1-like 
 bdi-r.1   100835231   ubiquitin fusion degradation protein 1 homolog 
 bdi-r.1   100841813   ubiquitin fusion degradation protein 1 homolog 
 cre-r.1   CHLRE_14g613350v5   uncharacterized protein 

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Top 50 coexpressed genes to AT4G38930 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G38930 (ath-m.9 coexpression data)

CoexMap"830048"


athAT4G38930 | Entrez gene ID : 830048      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 2 1 2 1 1 2 3 2 2 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04141 [list] [network] Protein processing in endoplasmic reticulum (220 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001328897.1 [sequence] [blastp]
NP_001328898.1 [sequence] [blastp]
NP_568048.1 [sequence] [blastp]
NP_974709.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cysk 2,  cyto 1,  mito 1  (predict for NP_001328897.1)
nucl 6,  mito 1,  cysk 1  (predict for NP_001328898.1)
nucl 6,  cysk 2,  cyto 1,  mito 1  (predict for NP_568048.1)
nucl 6,  mito 1,  cysk 1  (predict for NP_974709.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001328897.1)
other 8  (predict for NP_001328898.1)
other 8  (predict for NP_568048.1)
other 8  (predict for NP_974709.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT4G38930
ath-u.5
for
AT4G38930
ath-r.7
for
AT4G38930
ath-e.2
for
AT4G38930
ath-m.4.bio
for
AT4G38930
ath-m.4.hor
for
AT4G38930
ath-m.4.lig
for
AT4G38930
ath-m.4.str
for
AT4G38930
ath-m.4.tis
for
AT4G38930
ath-u.5
for
UFD1
ath-u.5
for
AT2G29070
bra-r.6
for
103842542
bra-r.6
for
103864264
bra-r.6
for
103864938
bna-r.1
for
106446907
bna-r.1
for
106446356
bna-r.1
for
106420772
ghi-r.1
for
107902026
ghi-r.1
for
107927951
ghi-r.1
for
107949091
cit-r.1
for
102610628
cit-r.1
for
102625489
gma-u.5
for
100803896
gma-u.5
for
100781066
vvi-u.5
for
100258971
ppo-u.5
for
7494294
ppo-u.5
for
7485696
mtr-u.5
for
11406565
sly-u.5
for
101248524
sot-r.1
for
102577706
sot-r.1
for
102601939
nta-r.1
for
107774380
nta-r.1
for
107786277
nta-r.1
for
107782973
osa-u.5
for
4336742
osa-u.5
for
4328514
zma-u.5
for
100282805
zma-u.5
for
100282176
tae-r.2
for
123190004
tae-r.2
for
100415820
tae-r.2
for
123132470
hvu-r.1
for
123402228
hvu-r.1
for
123427440
sbi-r.1
for
8077631
sbi-r.1
for
110436522
bdi-r.1
for
100835231
bdi-r.1
for
100841813
cre-r.1
for
CHLRE_14g613350v5


Ortholog ID: 2383
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol AT4G38930 UFD1 AT2G29070 LOC103842542 LOC103864264 LOC103864938 LOC106446907 LOC106446356 LOC106420772 LOC107902026 LOC107927951 LOC107949091 LOC102610628 LOC102625489 LOC100803896 LOC100781066 LOC100799569 LOC100258971 LOC7494294 LOC7485696 LOC101248524 LOC102577706 LOC102601939 LOC107786277 LOC107782973 LOC107774986 LOC4336742 LOC4328514 LOC100282805 LOC100282176 LOC100415820 LOC123132470 LOC123136537 LOC123402228 LOC123427440 LOC8077631 LOC110436522 LOC100835231 LOC100841813 CHLRE_14g613350v5
Function* Ubiquitin fusion degradation UFD1 family protein ubiquitin fusion degradation 1 Ubiquitin fusion degradation UFD1 family protein ubiquitin recognition factor in ER-associated degradation protein 1 ubiquitin recognition factor in ER-associated degradation protein 1 ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin recognition factor in ER-associated degradation protein 1 ubiquitin recognition factor in ER-associated degradation protein 1 ubiquitin fusion degradation protein 1 homolog ubiquitin recognition factor in ER-associated degradation protein 1 ubiquitin fusion degradation protein 1 homolog uncharacterized LOC102610628 uncharacterized LOC102625489 ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog uncharacterized LOC100258971 uncharacterized LOC7494294 uncharacterized LOC7485696 ubiquitin fusion degradation protein 1 homolog ubiquitin fusion-degradation protein-like ubiquitin fusion degradation protein 1 homolog uncharacterized LOC107786277 uncharacterized LOC107782973 uncharacterized LOC107774986 uncharacterized LOC4336742 ubiquitin fusion degradation protein 1 homolog uncharacterized LOC100282805 uncharacterized LOC100282176 ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog ubiquitin recognition factor in ER-associated degradation protein 1-like ubiquitin fusion degradation protein 1 homolog ubiquitin fusion degradation protein 1 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 4
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 4
ath04141 Protein processing in endoplasmic reticulum 4
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 4
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 6
bna04120 Ubiquitin mediated proteolysis 4
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
bna03250 Viral life cycle - HIV-1 2
bna03272 Virion - Hepatitis viruses 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
bna03250 Viral life cycle - HIV-1 2
bna03272 Virion - Hepatitis viruses 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 4
ghi00380 Tryptophan metabolism 2
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 4
ghi00380 Tryptophan metabolism 2
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 10
cit01200 Carbon metabolism 3
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma04144 Endocytosis 2
gma03082 ATP-dependent chromatin remodeling 2
gma03040 Spliceosome 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 4
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
vvi04120 Ubiquitin mediated proteolysis 2
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 9
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo04146 Peroxisome 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00071 Fatty acid degradation 5
sot00592 alpha-Linolenic acid metabolism 5
sot01212 Fatty acid metabolism 5
sot04146 Peroxisome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 4
sot04141 Protein processing in endoplasmic reticulum 3
sot00592 alpha-Linolenic acid metabolism 2
sot04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 4
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta04120 Ubiquitin mediated proteolysis 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta03420 Nucleotide excision repair 2
nta00900 Terpenoid backbone biosynthesis 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma04120 Ubiquitin mediated proteolysis 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae01230 Biosynthesis of amino acids 4
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 6
tae04141 Protein processing in endoplasmic reticulum 3
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu03013 Nucleocytoplasmic transport 2
hvu03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi04144 Endocytosis 2
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 3
sbi04144 Endocytosis 3
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
bdi04144 Endocytosis 2
bdi04145 Phagosome 2
bdi04148 Efferocytosis 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 4
cre03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830048 816666 817455 103842542 103864264 103864938 106446907 106446356 106420772 107902026 107927951 107949091 102610628 102625489 100803896 100781066 100799569 100258971 7494294 7485696 101248524 102577706 102601939 107786277 107782973 107774986 4336742 4328514 100282805 100282176 100415820 123132470 123136537 123402228 123427440 8077631 110436522 100835231 100841813 5724541
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