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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-u.5  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-r.7  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-e.2  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-m.4.bio  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-m.4.hor  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-m.4.lig  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-m.4.str  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-m.4.tis  CCR1  cold, circadian rhythm, and RNA binding 1 
 ath-u.5  AT5G06210  RNA binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5  AT1G73530  RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5  GR-RBP3  glycine-rich RNA-binding protein 3 
 bra-r.6  103868326  glycine-rich RNA-binding protein 2, mitochondrial 
 bra-r.6  103864290  glycine-rich RNA-binding protein GRP2A 
 bra-r.6  103852851  organelle RRM domain-containing protein 6, chloroplastic 
 bna-r.1  106438434  small RNA-binding protein 11, chloroplastic-like 
 bna-r.1  106438956  glycine-rich RNA-binding protein 10 
 bna-r.1  106439949  glycine-rich RNA-binding protein 3, mitochondrial 
 ghi-r.1  107928749  glycine-rich RNA-binding protein GRP1A 
 ghi-r.1  107929711  small RNA-binding protein 11, chloroplastic 
 ghi-r.1  107934430  glycine-rich RNA-binding protein 2, mitochondrial 
 cit-r.1  102625620  glycine-rich RNA-binding protein 2, mitochondrial 
 cit-r.1  102623019  glycine-rich RNA-binding protein 2, mitochondrial 
 gma-u.5  100806292  glycine-rich RNA-binding protein GRP1A 
 gma-u.5  100799124  heterogeneous nuclear ribonucleoprotein D-like 
 gma-u.5  112998378  glycine-rich RNA-binding protein GRP1A-like 
 vvi-u.5  100853676  glycine-rich RNA-binding protein GRP2A 
 vvi-u.5  100265324  glycine-rich RNA-binding protein 4, mitochondrial 
 vvi-u.5  100854881  small RNA-binding protein 11, chloroplastic 
 ppo-u.5  18105741  glycine-rich RNA-binding protein 3, mitochondrial 
 ppo-u.5  7485193  organelle RRM domain-containing protein 6, chloroplastic 
 ppo-u.5  7485722  small RNA-binding protein 11, chloroplastic 
 mtr-u.5  11438930  glycine-rich RNA-binding protein 4, mitochondrial 
 mtr-u.5  11436305  glycine-rich RNA-binding protein 2, mitochondrial 
 sly-u.5  101266771  glycine-rich RNA-binding protein 
 sly-u.5  GRP1  glycine-rich RNA-binding protein-like 
 sly-u.5  101262262  glycine-rich RNA-binding protein 
 sot-r.1  102581514  glycine-rich RNA-binding protein 4, mitochondrial 
 sot-r.1  102579149  glycine-rich RNA-binding protein 2, mitochondrial-like 
 sot-r.1  102587142  glycine-rich RNA-binding protein 
 nta-r.1  107773500  organelle RRM domain-containing protein 6, chloroplastic 
 nta-r.1  107763441  uncharacterized LOC107763441 
 nta-r.1  107776960  glycine-rich RNA-binding protein 4, mitochondrial-like 
 osa-u.5  4348309  glycine-rich RNA-binding protein 10 
 osa-u.5  9269592  organelle RRM domain-containing protein 6, chloroplastic 
 osa-u.5  9269210  glycine-rich RNA-binding protein 4, mitochondrial 
 zma-u.5  100194217  responsive to abscisic acid15 
 zma-u.5  100191295  Glycine-rich RNA-binding protein 3 mitochondrial 
 zma-u.5  100283778  uncharacterized LOC100283778 
 tae-r.2  123080303  glycine-rich RNA-binding protein 2, mitochondrial 
 hvu-r.1  123445181  glycine-rich RNA-binding protein 4, mitochondrial-like 
 hvu-r.1  123445204  glycine-rich RNA-binding protein 4, mitochondrial-like 
 hvu-r.1  123445239  glycine-rich RNA-binding protein 2, mitochondrial-like 
 sbi-r.1  8054129  glycine-rich RNA-binding protein 
 sbi-r.1  8060654  glycine-rich RNA-binding protein 8 
 sbi-r.1  110434104  glycine-rich RNA-binding protein 4, mitochondrial-like 
 bdi-r.1  100840808  glycine-rich RNA-binding protein 4, mitochondrial 
 bdi-r.1  100842305  glycine-rich RNA-binding protein blt801 
 bdi-r.1  100841917  glycine-rich RNA-binding protein 3, mitochondrial 
 cre-r.1  CHLRE_02g079400v5  uncharacterized protein 
 cre-r.1  CHLRE_01g032300v5  uncharacterized protein 
 cre-r.1  CHLRE_13g602850v5  uncharacterized protein 

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Top 50 coexpressed genes to CCR1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CCR1 (ath-m.9 coexpression data)

CoexMap"830082"


athCCR1 | Entrez gene ID : 830082
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 12 3 3 3 2 3 3 3 2 3 3 3 3 3 1 3 3 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006858 [list] [network] extracellular transport  (4 genes)  IDA  
GO:1990428 [list] [network] miRNA transport  (6 genes)  IDA  
GO:0000380 [list] [network] alternative mRNA splicing, via spliceosome  (10 genes)  IMP  
GO:0050688 [list] [network] regulation of defense response to virus  (17 genes)  IDA  
GO:0050658 [list] [network] RNA transport  (29 genes)  IDA  
GO:0010043 [list] [network] response to zinc ion  (51 genes)  IEP  
GO:0045087 [list] [network] innate immune response  (157 genes)  IDA  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO CC
GO:0005615 [list] [network] extracellular space  (45 genes)  IDA  
GO:0005777 [list] [network] peroxisome  (313 genes)  HDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0009505 [list] [network] plant-type cell wall  (504 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA RCA  
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0035197 [list] [network] siRNA binding  (9 genes)  IDA  
GO:0035198 [list] [network] miRNA binding  (11 genes)  IDA  
GO:0003727 [list] [network] single-stranded RNA binding  (56 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
Protein NP_195637.1 [sequence] [blastp]
NP_849523.1 [sequence] [blastp]
NP_849524.1 [sequence] [blastp]
NP_849525.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_195637.1)
nucl 4,  cyto 2,  mito 2,  cysk_nucl 2,  nucl_plas 2  (predict for NP_849523.1)
nucl 4,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_849524.1)
nucl 5,  cyto 2,  mito 1,  chlo 1,  extr 1,  cyto_mito 1,  mito_plas 1  (predict for NP_849525.1)
Subcellular
localization
TargetP
other 7  (predict for NP_195637.1)
other 7  (predict for NP_849523.1)
other 6  (predict for NP_849524.1)
other 6  (predict for NP_849525.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID
Other ID Link Target Condition-specific* Reference

ath-m.9
for
CCR1


ath-u.5
for
CCR1


ath-r.7
for
CCR1


ath-e.2
for
CCR1


ath-m.4.bio
for
CCR1


ath-m.4.hor
for
CCR1


ath-m.4.lig
for
CCR1


ath-m.4.str
for
CCR1


ath-m.4.tis
for
CCR1


ath-u.5
for
AT5G06210


ath-u.5
for
AT1G73530


ath-u.5
for
GR-RBP3


bra-r.6
for
103868326


bra-r.6
for
103864290


bra-r.6
for
103852851


bna-r.1
for
106438434


bna-r.1
for
106438956


bna-r.1
for
106439949


ghi-r.1
for
107928749


ghi-r.1
for
107929711


ghi-r.1
for
107934430


cit-r.1
for
102625620


cit-r.1
for
102623019


gma-u.5
for
100806292


gma-u.5
for
100799124


gma-u.5
for
112998378


vvi-u.5
for
100853676


vvi-u.5
for
100265324


vvi-u.5
for
100854881


ppo-u.5
for
18105741


ppo-u.5
for
7485193


ppo-u.5
for
7485722


mtr-u.5
for
11438930


mtr-u.5
for
11436305


sly-u.5
for
101266771


sly-u.5
for
GRP1


sly-u.5
for
101262262


sot-r.1
for
102581514


sot-r.1
for
102579149


sot-r.1
for
102587142


nta-r.1
for
107773500


nta-r.1
for
107763441


nta-r.1
for
107776960


osa-u.5
for
4348309


osa-u.5
for
9269592


osa-u.5
for
9269210


zma-u.5
for
100194217


zma-u.5
for
100191295


zma-u.5
for
100283778


tae-r.2
for
123080303


hvu-r.1
for
123445181


hvu-r.1
for
123445204


hvu-r.1
for
123445239


sbi-r.1
for
8054129


sbi-r.1
for
8060654


sbi-r.1
for
110434104


bdi-r.1
for
100840808


bdi-r.1
for
100842305


bdi-r.1
for
100841917


cre-r.1
for
CHLRE_02g079400v5


cre-r.1
for
CHLRE_01g032300v5


cre-r.1
for
CHLRE_13g602850v5



Ortholog ID: 75
Species ath ath bra bra bra bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi cre cre cre
Symbol AT5G06210 AT3G08000 LOC103852851 LOC103835157 LOC103851541 LOC106439949 LOC106365965 LOC107896330 LOC107960836 LOC107952135 LOC102623019 LOC102608923 LOC102627364 LOC100796704 LOC100305467 LOC100777821 LOC100854881 LOC100263981 LOC100246039 LOC7485193 LOC7485722 LOC18109442 LOC11436305 LOC25499413 LOC25497346 LOC101257264 LOC101254436 LOC101245474 LOC102581514 LOC102587142 LOC102587662 LOC107759364 LOC107787039 LOC142161681 LOC4352279 LOC4343831 LOC9266763 LOC100191295 LOC542725 LOC100284207 LOC123072018 LOC123134221 LOC123097872 LOC123400027 LOC123425384 LOC123403078 LOC110434104 LOC8075292 LOC8079176 LOC100840808 LOC100842305 CHLRE_02g079400v5 CHLRE_01g032300v5 CHLRE_09g392350v5
Function* RNA binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein organelle RRM domain-containing protein 6, chloroplastic glycine-rich RNA-binding protein 10 cold-inducible RNA-binding protein glycine-rich RNA-binding protein 3, mitochondrial glycine-rich RNA-binding protein GRP1A small RNA-binding protein 11, chloroplastic small RNA-binding protein 11, chloroplastic glycine-rich RNA-binding protein GRP1A glycine-rich RNA-binding protein 2, mitochondrial small RNA-binding protein 11, chloroplastic organelle RRM domain-containing protein 2, mitochondrial-like RNA recognition motif-containing protein putative glycine-rich RNA binding protein glycine-rich RNA-binding protein 2 small RNA-binding protein 11, chloroplastic small RNA-binding protein 11, chloroplastic organelle RRM domain-containing protein 6, chloroplastic organelle RRM domain-containing protein 6, chloroplastic small RNA-binding protein 11, chloroplastic small RNA-binding protein 11, chloroplastic glycine-rich RNA-binding protein 2, mitochondrial small RNA-binding protein 11, chloroplastic organelle RRM domain-containing protein 6, chloroplastic glycine-rich RNA-binding protein 4, mitochondrial glycine-rich RNA-binding protein 2, mitochondrial glycine-rich RNA-binding protein 4, mitochondrial glycine-rich RNA-binding protein 4, mitochondrial glycine-rich RNA-binding protein glycine-rich RNA-binding protein 2, mitochondrial-like glycine-rich RNA-binding protein 2, mitochondrial-like glycine-rich RNA-binding protein 3, mitochondrial-like glycine-rich RNA-binding protein-like glycine-rich RNA-binding protein blt801 glycine-rich RNA-binding protein 2, mitochondrial small RNA-binding protein 11, chloroplastic Glycine-rich RNA-binding protein 3 mitochondrial uncharacterized LOC542725 glycine-rich RNA-binding protein 7 glycine-rich RNA-binding protein 2, mitochondrial glycine-rich RNA-binding protein organelle RRM domain-containing protein 6, chloroplastic glycine-rich RNA-binding protein blt801-like loricrin-like glycine-rich RNA-binding protein-like glycine-rich RNA-binding protein 4, mitochondrial-like small RNA-binding protein 11, chloroplastic glycine-rich RNA-binding protein 4, mitochondrial glycine-rich RNA-binding protein 4, mitochondrial glycine-rich RNA-binding protein blt801 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
ath03040 Spliceosome 2
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04626 Plant-pathogen interaction 4
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00100 Steroid biosynthesis 4
ghi00940 Phenylpropanoid biosynthesis 3
ghi03013 Nucleocytoplasmic transport 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03040 Spliceosome 3
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03040 Spliceosome 3
mtr03420 Nucleotide excision repair 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 9
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 15
nta03008 Ribosome biogenesis in eukaryotes 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03008 Ribosome biogenesis in eukaryotes 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03010 Ribosome 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 5
tae03420 Nucleotide excision repair 5
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 4
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04145 Phagosome 3
sbi04517 IgSF CAM signaling 3
sbi04814 Motor proteins 3
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830508 819991 103852851 103835157 103851541 106439949 106365965 107896330 107960836 107952135 102623019 102608923 102627364 100796704 100305467 100777821 100854881 100263981 100246039 7485193 7485722 18109442 11436305 25499413 25497346 101257264 101254436 101245474 102581514 102587142 102587662 107759364 107787039 142161681 4352279 4343831 9266763 100191295 542725 100284207 123072018 123134221 123097872 123400027 123425384 123403078 110434104 8075292 8079176 100840808 100842305 5727272 5715399 5720095
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