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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PYD2   pyrimidine 2 
 ath-u.5   PYD2   pyrimidine 2 
 ath-r.7   PYD2   pyrimidine 2 
 ath-e.2   PYD2   pyrimidine 2 
 ath-m.4.bio   PYD2   pyrimidine 2 
 ath-m.4.hor   PYD2   pyrimidine 2 
 ath-m.4.lig   PYD2   pyrimidine 2 
 ath-m.4.str   PYD2   pyrimidine 2 
 ath-m.4.tis   PYD2   pyrimidine 2 
 bra-r.6   103846659   dihydropyrimidinase 
 bna-r.1   106372355   dihydropyrimidinase-like 
 bna-r.1   106424521   dihydropyrimidinase 
 ghi-r.1   107943436   dihydropyrimidinase 
 ghi-r.1   107938386   dihydropyrimidinase 
 ghi-r.1   107954335   dihydropyrimidinase 
 cit-r.1   102627040   dihydropyrimidinase 
 gma-u.5   100802353   dihydropyrimidinase 
 gma-u.5   100797867   dihydropyrimidinase 
 gma-u.5   100781590   dihydropyrimidinase-like 
 vvi-u.5   100249986   dihydropyrimidinase 
 ppo-u.5   7480110   dihydropyrimidinase 
 ppo-u.5   7454881   dihydropyrimidinase 
 mtr-u.5   11434280   dihydropyrimidinase 
 mtr-u.5   11421464   dihydropyrimidinase 
 sly-u.5   101261880   dihydropyrimidinase 
 sot-r.1   102588501   dihydropyrimidinase 
 nta-r.1   107827015   dihydropyrimidinase 
 nta-r.1   107776906   dihydropyrimidinase 
 osa-u.5   4327558   dihydropyrimidinase 
 zma-u.5   100272767   Dihydropyrimidinase 
 tae-r.2   123071126   dihydropyrimidinase 
 tae-r.2   123062351   dihydropyrimidinase 
 tae-r.2   123079488   dihydropyrimidinase 
 hvu-r.1   123444648   dihydropyrimidinase 
 sbi-r.1   8082416   dihydropyrimidinase 
 bdi-r.1   100846794   dihydropyrimidinase 
 cre-r.1   CHLRE_02g097000v5   uncharacterized protein 

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Top 50 coexpressed genes to PYD2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PYD2 (ath-m.9 coexpression data)

CoexMap"831093"


athPYD2 | Entrez gene ID : 831093      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 3 1 2 2 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00240 [list] [network] Pyrimidine metabolism (65 genes)
ath00410 [list] [network] beta-Alanine metabolism (47 genes)
ath00770 [list] [network] Pantothenate and CoA biosynthesis (34 genes)
GO BP
GO:0006212 [list] [network] uracil catabolic process  (3 genes)  IMP  
GO:0043562 [list] [network] cellular response to nitrogen levels  (39 genes)  IEP  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0012505 [list] [network] endomembrane system  (2163 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0004157 [list] [network] dihydropyrimidinase activity  (1 genes)  IGI  
Protein NP_568258.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 2,  E.R. 2,  E.R._plas 2,  chlo 1,  cyto 1,  cysk 1,  nucl_plas 1  (predict for NP_568258.2)
Subcellular
localization
TargetP
scret 9,  chlo 3  (predict for NP_568258.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PYD2
ath-u.5
for
PYD2
ath-r.7
for
PYD2
ath-e.2
for
PYD2
ath-m.4.bio
for
PYD2
ath-m.4.hor
for
PYD2
ath-m.4.lig
for
PYD2
ath-m.4.str
for
PYD2
ath-m.4.tis
for
PYD2
bra-r.6
for
103846659
bna-r.1
for
106372355
bna-r.1
for
106424521
ghi-r.1
for
107943436
ghi-r.1
for
107938386
ghi-r.1
for
107954335
cit-r.1
for
102627040
gma-u.5
for
100802353
gma-u.5
for
100797867
gma-u.5
for
100781590
vvi-u.5
for
100249986
ppo-u.5
for
7480110
ppo-u.5
for
7454881
mtr-u.5
for
11434280
mtr-u.5
for
11421464
sly-u.5
for
101261880
sot-r.1
for
102588501
nta-r.1
for
107827015
nta-r.1
for
107776906
osa-u.5
for
4327558
zma-u.5
for
100272767
tae-r.2
for
123071126
tae-r.2
for
123062351
tae-r.2
for
123079488
hvu-r.1
for
123444648
sbi-r.1
for
8082416
bdi-r.1
for
100846794
cre-r.1
for
CHLRE_02g097000v5


Ortholog ID: 7714
Species ath bra bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PYD2 LOC103846659 LOC106372355 LOC106424521 LOC107943436 LOC107938386 LOC107953244 LOC102627040 LOC100802353 LOC100797867 LOC100781590 LOC100249986 LOC7480110 LOC7454881 LOC11434280 LOC11421464 LOC101261880 LOC102588501 LOC107827015 LOC107776906 LOC4327558 LOC100272767 LOC123071126 LOC123062351 LOC123079488 LOC123444648 LOC8082416 LOC100846794 CHLRE_02g097000v5
Function* pyrimidine 2 dihydropyrimidinase dihydropyrimidinase-like dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase-like dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase Dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase dihydropyrimidinase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00240 Pyrimidine metabolism 3
ath00410 beta-Alanine metabolism 3
ath00770 Pantothenate and CoA biosynthesis 3
ath04016 MAPK signaling pathway - plant 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00410 beta-Alanine metabolism 3
bra00770 Pantothenate and CoA biosynthesis 3
bra00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 6
bna00410 beta-Alanine metabolism 6
bna00770 Pantothenate and CoA biosynthesis 6
bna00600 Sphingolipid metabolism 3
bna04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 5
bna04142 Lysosome 4
bna00410 beta-Alanine metabolism 3
bna00770 Pantothenate and CoA biosynthesis 3
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 4
ghi00240 Pyrimidine metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 3
gma00410 beta-Alanine metabolism 3
gma00240 Pyrimidine metabolism 2
gma00770 Pantothenate and CoA biosynthesis 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 5
gma00240 Pyrimidine metabolism 2
gma00410 beta-Alanine metabolism 2
gma00770 Pantothenate and CoA biosynthesis 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00511 Other glycan degradation 3
ppo00240 Pyrimidine metabolism 2
ppo00410 beta-Alanine metabolism 2
ppo00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00480 Glutathione metabolism 2
ppo03015 mRNA surveillance pathway 2
ppo04136 Autophagy - other 2
ppo04382 Cornified envelope formation 2
ppo00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr00410 beta-Alanine metabolism 3
mtr00240 Pyrimidine metabolism 2
mtr00770 Pantothenate and CoA biosynthesis 2
mtr00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00410 beta-Alanine metabolism 3
mtr00511 Other glycan degradation 3
mtr00240 Pyrimidine metabolism 2
mtr00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 3
sly00410 beta-Alanine metabolism 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 4
sot01200 Carbon metabolism 3
sot00071 Fatty acid degradation 3
sot01212 Fatty acid metabolism 3
sot00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta00240 Pyrimidine metabolism 2
nta00410 beta-Alanine metabolism 2
nta00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta00240 Pyrimidine metabolism 2
nta00410 beta-Alanine metabolism 2
nta00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00511 Other glycan degradation 4
osa00520 Amino sugar and nucleotide sugar metabolism 4
osa00052 Galactose metabolism 2
osa00500 Starch and sucrose metabolism 2
osa00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 4
zma00410 beta-Alanine metabolism 4
zma04146 Peroxisome 3
zma00071 Fatty acid degradation 3
zma00592 alpha-Linolenic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 6
tae00220 Arginine biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
tae00410 beta-Alanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 6
tae00410 beta-Alanine metabolism 3
tae00770 Pantothenate and CoA biosynthesis 3
tae00760 Nicotinate and nicotinamide metabolism 3
tae01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00770 Pantothenate and CoA biosynthesis 6
tae00240 Pyrimidine metabolism 6
tae01240 Biosynthesis of cofactors 3
tae00410 beta-Alanine metabolism 3
tae00760 Nicotinate and nicotinamide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00240 Pyrimidine metabolism 2
bdi03250 Viral life cycle - HIV-1 2
bdi03272 Virion - Hepatitis viruses 2
bdi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831093 103846659 106372355 106424521 107943436 107938386 107953244 102627040 100802353 100797867 100781590 100249986 7480110 7454881 11434280 11421464 101261880 102588501 107827015 107776906 4327558 100272767 123071126 123062351 123079488 123444648 8082416 100846794 5725602
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