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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SIG4   sigma factor 4 
 ath-u.5   SIG4   sigma factor 4 
 ath-r.7   SIG4   sigma factor 4 
 ath-e.2   SIG4   sigma factor 4 
 ath-m.4.bio   SIG4   sigma factor 4 
 ath-m.4.hor   SIG4   sigma factor 4 
 ath-m.4.lig   SIG4   sigma factor 4 
 ath-m.4.str   SIG4   sigma factor 4 
 ath-m.4.tis   SIG4   sigma factor 4 
 bra-r.6   103850892   RNA polymerase sigma factor sigD, chloroplastic 
 bra-r.6   103846548   RNA polymerase sigma factor sigD, chloroplastic 
 bna-r.1   106372272   RNA polymerase sigma factor sigD, chloroplastic 
 bna-r.1   106384365   RNA polymerase sigma factor sigD, chloroplastic 
 bna-r.1   106417562   RNA polymerase sigma factor sigD, chloroplastic-like 
 cit-r.1   102630560   RNA polymerase sigma factor sigD, chloroplastic 
 vvi-u.5   100244848   RNA polymerase sigma factor sigD, chloroplastic 
 ppo-u.5   18102037   RNA polymerase sigma factor sigD, chloroplastic 
 mtr-u.5   120579652   RNA polymerase sigma factor sigD, chloroplastic 
 mtr-u.5   11409298   RNA polymerase sigma factor sigD, chloroplastic 
 sly-u.5   101266372   RNA polymerase sigma factor sigD, chloroplastic 
 sot-r.1   102579944   RNA polymerase sigma factor sigD, chloroplastic 
 nta-r.1   107792030   RNA polymerase sigma factor sigD, chloroplastic 
 nta-r.1   107830369   RNA polymerase sigma factor sigD, chloroplastic 

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Top 50 coexpressed genes to SIG4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIG4 (ath-m.9 coexpression data)

CoexMap"831218"


athSIG4 | Entrez gene ID : 831218      
Species ath bra bna cit vvi ppo mtr sly sot nta bdi osa tae zma cre sbi gma ghi hvu
Paralog 9 2 3 1 1 1 2 1 1 2 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (35 genes)  ISS TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (105 genes)  IEP  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1621 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM ISS  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
Protein NP_196877.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  plas 1,  pero 1  (predict for NP_196877.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_196877.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SIG4
ath-u.5
for
SIG4
ath-r.7
for
SIG4
ath-e.2
for
SIG4
ath-m.4.bio
for
SIG4
ath-m.4.hor
for
SIG4
ath-m.4.lig
for
SIG4
ath-m.4.str
for
SIG4
ath-m.4.tis
for
SIG4
bra-r.6
for
103850892
bra-r.6
for
103846548
bna-r.1
for
106372272
bna-r.1
for
106384365
bna-r.1
for
106417562
cit-r.1
for
102630560
vvi-u.5
for
100244848
ppo-u.5
for
18102037
mtr-u.5
for
120579652
mtr-u.5
for
11409298
sly-u.5
for
101266372
sot-r.1
for
102579944
nta-r.1
for
107792030
nta-r.1
for
107830369


Ortholog ID: 13192
Species ath bra bra bna bna bna cit vvi ppo mtr mtr sly sot nta nta
Symbol SIG4 LOC103850892 LOC103846548 LOC106372272 LOC106417562 LOC125574912 LOC102630560 LOC100244848 LOC18102037 LOC120579652 LOC11409298 LOC101266372 LOC102579944 LOC107792030 LOC107830369
Function* sigma factor 4 RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic-like RNA polymerase sigma factor sigD, chloroplastic-like RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic RNA polymerase sigma factor sigD, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831218 103850892 103846548 106372272 106417562 125574912 102630560 100244848 18102037 120579652 11409298 101266372 102579944 107792030 107830369
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