ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT5G14260	Rubisco methyltransferase family protein
ath-u.5	AT5G14260	Rubisco methyltransferase family protein
ath-r.7	AT5G14260	Rubisco methyltransferase family protein
ath-e.2	AT5G14260	Rubisco methyltransferase family protein
ath-m.4.bio	AT5G14260	Rubisco methyltransferase family protein
ath-m.4.hor	AT5G14260	Rubisco methyltransferase family protein
ath-m.4.lig	AT5G14260	Rubisco methyltransferase family protein
ath-m.4.str	AT5G14260	Rubisco methyltransferase family protein
ath-m.4.tis	AT5G14260	Rubisco methyltransferase family protein
bra-r.6	103850920	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
bra-r.6	103846498	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
bna-r.1	106364626	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like
bna-r.1	106418287	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like
bna-r.1	111201473	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like
ghi-r.1	107924024	actin-histidine N-methyltransferase
ghi-r.1	107957011	uncharacterized LOC107957011
ghi-r.1	107899701	uncharacterized LOC107899701
cit-r.1	102615867	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
gma-u.5	100802221	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
gma-u.5	100797268	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
vvi-u.5	100255895	uncharacterized LOC100255895
ppo-u.5	18107264	ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic
mtr-u.5	11422087	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
sly-u.5	101250184	uncharacterized LOC101250184
sot-r.1	102600616	uncharacterized LOC102600616
nta-r.1	107804400	uncharacterized LOC107804400
nta-r.1	107767517	uncharacterized LOC107767517
osa-u.5	4351854	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
zma-u.5	103636117	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
zma-u.5	100193433	uncharacterized LOC100193433
tae-r.2	123120019	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
tae-r.2	123110921	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
tae-r.2	123102744	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
hvu-r.1	123398318	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
sbi-r.1	8054936	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
bdi-r.1	100846657	fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic
cre-r.1	CHLRE_12g524500v5	uncharacterized protein

Top 50 coexpressed genes to AT5G14260 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G14260 (ath-m.9 coexpression data)

CoexMap"831276"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009570 [list] [network] chloroplast stroma	(693 genes)	HDA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	ISM
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA ISM
GO:0009536 [list] [network] plastid	(5443 genes)	HDA

GO MF

Protein

NP_001331285.1 [sequence] [blastp]
NP_196930.2 [sequence] [blastp]
NP_851038.1 [sequence] [blastp]
NP_974778.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, mito 1	(predict for NP_001331285.1)
chlo 8, chlo_mito 5, mito 1	(predict for NP_196930.2)
chlo 8, chlo_mito 5, mito 1	(predict for NP_851038.1)
chlo 8, chlo_mito 5, mito 1	(predict for NP_974778.1)

Subcellular
localization
TargetP

chlo 9	(predict for NP_001331285.1)
chlo 9	(predict for NP_196930.2)
chlo 9	(predict for NP_851038.1)
chlo 9	(predict for NP_974778.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT5G14260	ath-u.5 for AT5G14260	ath-r.7 for AT5G14260	ath-e.2 for AT5G14260	ath-m.4.bio for AT5G14260	ath-m.4.hor for AT5G14260	ath-m.4.lig for AT5G14260	ath-m.4.str for AT5G14260	ath-m.4.tis for AT5G14260	bra-r.6 for 103850920	bra-r.6 for 103846498	bna-r.1 for 106364626	bna-r.1 for 106418287	bna-r.1 for 111201473	ghi-r.1 for 107924024	ghi-r.1 for 107957011	ghi-r.1 for 107899701	cit-r.1 for 102615867	gma-u.5 for 100802221	gma-u.5 for 100797268	vvi-u.5 for 100255895	ppo-u.5 for 18107264	mtr-u.5 for 11422087	sly-u.5 for 101250184	sot-r.1 for 102600616	nta-r.1 for 107804400	nta-r.1 for 107767517	osa-u.5 for 4351854	zma-u.5 for 103636117	zma-u.5 for 100193433	tae-r.2 for 123120019	tae-r.2 for 123110921	tae-r.2 for 123102744	hvu-r.1 for 123398318	sbi-r.1 for 8054936	bdi-r.1 for 100846657	cre-r.1 for CHLRE_12g524500v5

Ortholog

Ortholog ID: 7718

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Rubisco methyltransferase family protein

ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic

ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like

actin-histidine N-methyltransferase

uncharacterized LOC107957011

uncharacterized LOC107899701

ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic

uncharacterized LOC100255895

ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic

fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic

uncharacterized LOC101250184

uncharacterized LOC102600616

uncharacterized LOC107804400

uncharacterized LOC107767517

fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic

uncharacterized LOC100193433

fructose-bisphosphate aldolase-lysine N-methyltransferase, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00860	Porphyrin metabolism	8
ath01240	Biosynthesis of cofactors	7
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	4
bra01240	Biosynthesis of cofactors	4
bra00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	3
gma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2
ppo00566	Sulfoquinovose metabolism	2
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	4
osa00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	2
zma00561	Glycerolipid metabolism	2
zma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	4
tae00053	Ascorbate and aldarate metabolism	2
tae00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00053	Ascorbate and aldarate metabolism	3
tae00480	Glutathione metabolism	3
tae03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	3
sbi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00860	Porphyrin metabolism	5
cre01240	Biosynthesis of cofactors	4
cre00970	Aminoacyl-tRNA biosynthesis	2

Expression

Expression pattern

Entrez Gene ID^*

831276

103850920

103846498

106364626

106418287

111201473

107924024

107957011

107899701

102615867

100802221

100797268

100255895

18107264

11422087

101250184

102600616

107804400

107767517

4351854

103636117

100193433

123120019

123110921

123102744

123398318

8054936

100846657

5722518

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	2	3	3	1	2	1	1	1	1	1	2	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G14260 (ath-m.9 coexpression data)

Top 50 enrichment test to AT5G14260 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**