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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   APD2   RING/U-box superfamily protein 
 ath-u.5   APD2   RING/U-box superfamily protein 
 ath-r.7   APD2   RING/U-box superfamily protein 
 ath-e.2   APD2   RING/U-box superfamily protein 
 ath-m.4.bio   APD2   RING/U-box superfamily protein 
 ath-m.4.hor   APD2   RING/U-box superfamily protein 
 ath-m.4.lig   APD2   RING/U-box superfamily protein 
 ath-m.4.str   APD2   RING/U-box superfamily protein 
 ath-m.4.tis   APD2   RING/U-box superfamily protein 
 ath-u.5   APD1   RING/U-box superfamily protein 
 bra-r.6   103855419   E3 ubiquitin-protein ligase APD2 
 bra-r.6   103857765   E3 ubiquitin-protein ligase APD1 
 bna-r.1   106358274   E3 ubiquitin-protein ligase APD1 
 bna-r.1   106454635   E3 ubiquitin-protein ligase APD1 
 ghi-r.1   107910307   E3 ubiquitin-protein ligase APD2 
 ghi-r.1   107906620   E3 ubiquitin-protein ligase APD2 
 ghi-r.1   107951033   E3 ubiquitin-protein ligase APD2 
 cit-r.1   102622796   E3 ubiquitin-protein ligase APD2-like 
 cit-r.1   102608051   E3 ubiquitin-protein ligase APD2 
 gma-u.5   100794488   E3 ubiquitin-protein ligase APD1 
 gma-u.5   100791057   E3 ubiquitin-protein ligase APD2 
 gma-u.5   100777141   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100258653   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100248821   E3 ubiquitin-protein ligase APD2 
 vvi-u.5   100247198   E3 ubiquitin-protein ligase APD2 
 ppo-u.5   7466072   E3 ubiquitin-protein ligase APD2 
 sly-u.5   101252132   E3 ubiquitin-protein ligase APD4 
 sly-u.5   101252808   E3 ubiquitin-protein ligase APD2 
 sot-r.1   102599744   E3 ubiquitin-protein ligase MYLIP-A 
 sot-r.1   102603607   uncharacterized LOC102603607 
 nta-r.1   107831645   E3 ubiquitin-protein ligase APD2-like 
 nta-r.1   107831062   E3 ubiquitin-protein ligase APD2 
 cre-r.1   CHLRE_16g649150v5   uncharacterized protein 
 cre-r.1   CHLRE_01g000750v5   uncharacterized protein 

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Top 50 coexpressed genes to APD2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to APD2 (ath-m.9 coexpression data)

CoexMap"831860"


athAPD2 | Entrez gene ID : 831860      
Species ath bra bna ghi cit gma vvi ppo sly sot nta cre bdi osa tae zma mtr sbi hvu
Paralog 10 2 2 3 2 3 3 1 2 2 2 2 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000278 [list] [network] mitotic cell cycle  (76 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0009705 [list] [network] plant-type vacuole membrane  (117 genes)  IDA  
GO:0005768 [list] [network] endosome  (359 genes)  IDA  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_195765.3 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  chlo 1,  extr 1,  cysk 1,  nucl_plas 1  (predict for NP_195765.3)
Subcellular
localization
TargetP
other 6,  chlo 5  (predict for NP_195765.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
APD2
ath-u.5
for
APD2
ath-r.7
for
APD2
ath-e.2
for
APD2
ath-m.4.bio
for
APD2
ath-m.4.hor
for
APD2
ath-m.4.lig
for
APD2
ath-m.4.str
for
APD2
ath-m.4.tis
for
APD2
ath-u.5
for
APD1
bra-r.6
for
103855419
bra-r.6
for
103857765
bna-r.1
for
106358274
bna-r.1
for
106454635
ghi-r.1
for
107910307
ghi-r.1
for
107906620
ghi-r.1
for
107951033
cit-r.1
for
102622796
cit-r.1
for
102608051
gma-u.5
for
100794488
gma-u.5
for
100791057
gma-u.5
for
100777141
vvi-u.5
for
100258653
vvi-u.5
for
100248821
vvi-u.5
for
100247198
ppo-u.5
for
7466072
sly-u.5
for
101252132
sly-u.5
for
101252808
sot-r.1
for
102599744
sot-r.1
for
102603607
nta-r.1
for
107831645
nta-r.1
for
107831062
cre-r.1
for
CHLRE_16g649150v5
cre-r.1
for
CHLRE_01g000750v5


Ortholog ID: 1842
Species ath bra bra bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo sly sly sot sot nta nta cre cre
Symbol APD2 LOC103855419 LOC103857765 LOC106358274 LOC106438161 LOC107906620 LOC107958061 LOC107892564 LOC102622796 LOC102608051 LOC100794488 LOC100791057 LOC100777075 LOC100258653 LOC100247198 LOC100245723 LOC7466072 LOC101252132 LOC101252808 LOC102599744 LOC102603607 LOC107831645 LOC107831062 CHLRE_16g649150v5 CHLRE_01g000750v5
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD1-like E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2-like E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD1 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase APD4 E3 ubiquitin-protein ligase APD2 E3 ubiquitin-protein ligase MYLIP-A uncharacterized LOC102603607 E3 ubiquitin-protein ligase APD2-like E3 ubiquitin-protein ligase APD2 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04144 Endocytosis 2
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04081 Hormone signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 6
sot00520 Amino sugar and nucleotide sugar metabolism 5
sot01250 Biosynthesis of nucleotide sugars 5
sot00052 Galactose metabolism 3
sot00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00600 Sphingolipid metabolism 2
cre04382 Cornified envelope formation 2
cre00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831860 103855419 103857765 106358274 106438161 107906620 107958061 107892564 102622796 102608051 100794488 100791057 100777075 100258653 100247198 100245723 7466072 101252132 101252808 102599744 102603607 107831645 107831062 5723817 66051883
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