ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	SPL7	squamosa promoter binding protein-like 7
ath-u.5	SPL7	squamosa promoter binding protein-like 7
ath-r.7	SPL7	squamosa promoter binding protein-like 7
ath-e.2	SPL7	squamosa promoter binding protein-like 7
ath-m.4.bio	SPL7	squamosa promoter binding protein-like 7
ath-m.4.hor	SPL7	squamosa promoter binding protein-like 7
ath-m.4.lig	SPL7	squamosa promoter binding protein-like 7
ath-m.4.str	SPL7	squamosa promoter binding protein-like 7
ath-m.4.tis	SPL7	squamosa promoter binding protein-like 7
bra-r.6	103851198	squamosa promoter-binding-like protein 7
bra-r.6	103845803	squamosa promoter-binding-like protein 7
bna-r.1	106371909	squamosa promoter-binding-like protein 7
bna-r.1	106431473	squamosa promoter-binding-like protein 7
bna-r.1	106388093	squamosa promoter-binding-like protein 7
ghi-r.1	107949170	squamosa promoter-binding-like protein 7
ghi-r.1	107932153	squamosa promoter-binding-like protein 7
ghi-r.1	107916118	squamosa promoter-binding-like protein 7
cit-r.1	102623493	squamosa promoter-binding-like protein 7
gma-u.5	100819905	squamosa promoter-binding-like protein 7
gma-u.5	100776034	squamosa promoter-binding-like protein 7
vvi-u.5	100251222	squamosa promoter-binding-like protein 7
ppo-u.5	7475943	squamosa promoter-binding-like protein 7
ppo-u.5	7473261	squamosa promoter-binding-like protein 7
mtr-u.5	11437830	squamosa promoter-binding-like protein 7
sly-u.5	101246959	squamosa promoter-binding-like protein 7
sot-r.1	102589373	squamosa promoter-binding-like protein 7
nta-r.1	107763621	squamosa promoter-binding-like protein 7
nta-r.1	107831302	squamosa promoter-binding-like protein 7
nta-r.1	142161593	squamosa promoter-binding-like protein 7
osa-u.5	4338766	squamosa promoter-binding-like protein 9
zma-u.5	103635674	SBP-transcription factor 11
tae-r.2	123055357	squamosa promoter-binding-like protein 9
tae-r.2	123132471	squamosa promoter-binding-like protein 9
tae-r.2	123181989	squamosa promoter-binding-like protein 9
hvu-r.1	123441369	squamosa promoter-binding-like protein 9
sbi-r.1	8085123	squamosa promoter-binding-like protein 9
bdi-r.1	100843550	squamosa promoter-binding-like protein 9

Annotation

functional annotation

KEGG

GO BP

GO:0035874 [list] [network] cellular response to copper ion starvation	(2 genes)	IMP
GO:0006878 [list] [network] intracellular copper ion homeostasis	(7 genes)	IMP
GO:0055070 [list] [network] copper ion homeostasis	(12 genes)	IMP
GO:0048638 [list] [network] regulation of developmental growth	(197 genes)	IMP
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1618 genes)	IDA IPI TAS

GO CC

GO:0016607 [list] [network] nuclear speck	(52 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0042803 [list] [network] protein homodimerization activity	(237 genes)	IDA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003677 [list] [network] DNA binding	(1274 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001190333.1 [sequence] [blastp]
NP_197384.1 [sequence] [blastp]
NP_850850.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, vacu 1	(predict for NP_001190333.1)
nucl 7, vacu 2	(predict for NP_197384.1)
nucl 7, vacu 1, cyto 1, plas 1, E.R._vacu 1, cyto_plas 1	(predict for NP_850850.1)

Subcellular
localization
TargetP

other 8, chlo 3	(predict for NP_001190333.1)
other 8, chlo 3	(predict for NP_197384.1)
other 8, chlo 3	(predict for NP_850850.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for SPL7	ath-u.5 for SPL7	ath-r.7 for SPL7	ath-e.2 for SPL7	ath-m.4.bio for SPL7	ath-m.4.hor for SPL7	ath-m.4.lig for SPL7	ath-m.4.str for SPL7	ath-m.4.tis for SPL7	bra-r.6 for 103851198	bra-r.6 for 103845803	bna-r.1 for 106371909	bna-r.1 for 106431473	bna-r.1 for 106388093	ghi-r.1 for 107949170	ghi-r.1 for 107932153	ghi-r.1 for 107916118	cit-r.1 for 102623493	gma-u.5 for 100819905	gma-u.5 for 100776034	vvi-u.5 for 100251222	ppo-u.5 for 7475943	ppo-u.5 for 7473261	mtr-u.5 for 11437830	sly-u.5 for 101246959	sot-r.1 for 102589373	nta-r.1 for 107763621	nta-r.1 for 107831302	nta-r.1 for 142161593	osa-u.5 for 4338766	zma-u.5 for 103635674	tae-r.2 for 123055357	tae-r.2 for 123132471	tae-r.2 for 123181989	hvu-r.1 for 123441369	sbi-r.1 for 8085123	bdi-r.1 for 100843550

Ortholog

Ortholog ID: 7340

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SPL7

Function^*

squamosa promoter binding protein-like 7

squamosa promoter-binding-like protein 7

squamosa promoter-binding-like protein 9

SBP-transcription factor 11

squamosa promoter-binding-like protein 9

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	12
bra00941	Flavonoid biosynthesis	5
bra00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	3
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma04626	Plant-pathogen interaction	2
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00562	Inositol phosphate metabolism	3
mtr04120	Ubiquitin mediated proteolysis	3
mtr04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

832001

103851198

103845803

106371909

106388093

106387817

107949170

107916118

107897641

102623493

100819905

100776034

100251222

7475943

7473261

11437830

101246959

102589373

107763621

107831302

142161593

4338766

103635674

123055357

123132471

123181989

123441369

8085123

100843550

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to SPL7 (ath-m.9 coexpression data)

Top 50 enrichment test to SPL7 (ath-m.9 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	2	3	3	1	2	1	2	1	1	1	3	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SPL7 (ath-m.9 coexpression data)

Top 50 enrichment test to SPL7 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**