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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CHR42   chromatin remodeling 42 
 ath-u.5   CHR42   chromatin remodeling 42 
 ath-r.7   CHR42   chromatin remodeling 42 
 ath-e.2   CHR42   chromatin remodeling 42 
 ath-m.4.bio   CHR42   chromatin remodeling 42 
 ath-m.4.hor   CHR42   chromatin remodeling 42 
 ath-m.4.lig   CHR42   chromatin remodeling 42 
 ath-m.4.str   CHR42   chromatin remodeling 42 
 ath-m.4.tis   CHR42   chromatin remodeling 42 
 ath-u.5   CHR38   chromatin remodeling 38 
 bra-r.6   103834007   SNF2 domain-containing protein CLASSY 1 
 bna-r.1   106436900   SNF2 domain-containing protein CLASSY 1 
 bna-r.1   106360714   SNF2 domain-containing protein CLASSY 1-like 
 ghi-r.1   107962126   SNF2 domain-containing protein CLASSY 1 
 ghi-r.1   107900547   SNF2 domain-containing protein CLASSY 1 
 cit-r.1   102610506   SNF2 domain-containing protein CLASSY 1-like 
 cit-r.1   102611707   SNF2 domain-containing protein CLASSY 1-like 
 gma-u.5   100811703   SNF2 domain-containing protein CLASSY 1 
 gma-u.5   100785036   SNF2 domain-containing protein CLASSY 2 
 vvi-u.5   100250037   SNF2 domain-containing protein CLASSY 1 
 ppo-u.5   7462098   SNF2 domain-containing protein CLASSY 2 
 mtr-u.5   11435042   SNF2 domain-containing protein CLASSY 1 
 sly-u.5   101262122   SNF2 domain-containing protein CLASSY 1-like 
 sot-r.1   102579983   SNF2 domain-containing protein CLASSY 1-like 
 nta-r.1   107807410   SNF2 domain-containing protein CLASSY 1-like 
 nta-r.1   107789754   SNF2 domain-containing protein CLASSY 1 
 osa-u.5   4344376   SNF2 domain-containing protein CLASSY 1 
 zma-u.5   103633601   SNF2 domain-containing protein CLASSY 1 
 sbi-r.1   8084981   SNF2 domain-containing protein CLASSY 1 
 bdi-r.1   100839149   SNF2 domain-containing protein CLASSY 1 

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Top 50 coexpressed genes to CHR42 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHR42 (ath-m.9 coexpression data)

CoexMap"832164"


athCHR42 | Entrez gene ID : 832164      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma sbi bdi tae cre hvu
Paralog 10 1 2 2 2 2 1 1 1 1 1 2 1 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
GO BP
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (44 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (21 genes)  IEA  
Protein NP_197542.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 4,  chlo 1  (predict for NP_197542.1)
Subcellular
localization
TargetP
other 8  (predict for NP_197542.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CHR42
ath-u.5
for
CHR42
ath-r.7
for
CHR42
ath-e.2
for
CHR42
ath-m.4.bio
for
CHR42
ath-m.4.hor
for
CHR42
ath-m.4.lig
for
CHR42
ath-m.4.str
for
CHR42
ath-m.4.tis
for
CHR42
ath-u.5
for
CHR38
bra-r.6
for
103834007
bna-r.1
for
106436900
bna-r.1
for
106360714
ghi-r.1
for
107962126
ghi-r.1
for
107900547
cit-r.1
for
102610506
cit-r.1
for
102611707
gma-u.5
for
100811703
gma-u.5
for
100785036
vvi-u.5
for
100250037
ppo-u.5
for
7462098
mtr-u.5
for
11435042
sly-u.5
for
101262122
sot-r.1
for
102579983
nta-r.1
for
107807410
nta-r.1
for
107789754
osa-u.5
for
4344376
zma-u.5
for
103633601
sbi-r.1
for
8084981
bdi-r.1
for
100839149


Ortholog ID: 6279
Species ath ath bra bna bna ghi ghi cit cit gma gma vvi ppo mtr sly sot nta nta osa zma sbi bdi
Symbol CHR42 CHR38 LOC103834007 LOC106436900 LOC106360714 LOC107962126 LOC107900547 LOC102610506 LOC102611707 LOC100811703 LOC100785036 LOC100250037 LOC7462098 LOC11435042 LOC101262122 LOC102579983 LOC107807410 LOC107789754 LOC4344376 LOC103633601 LOC8084981 LOC100839149
Function* chromatin remodeling 42 chromatin remodeling 38 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 2 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 2 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1-like SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1 SNF2 domain-containing protein CLASSY 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra03020 RNA polymerase 2
bra00260 Glycine, serine and threonine metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00051 Fructose and mannose metabolism 6
ghi03013 Nucleocytoplasmic transport 4
ghi04075 Plant hormone signal transduction 4
ghi00562 Inositol phosphate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 6
ghi00051 Fructose and mannose metabolism 6
ghi03013 Nucleocytoplasmic transport 4
ghi04075 Plant hormone signal transduction 4
ghi00562 Inositol phosphate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
cit03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 5
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832164 823287 103834007 106436900 106360714 107962126 107900547 102610506 102611707 100811703 100785036 100250037 7462098 11435042 101262122 102579983 107807410 107789754 4344376 103633601 8084981 100839149
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