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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   COPT5   copper transporter 5 
 ath-u.5   COPT5   copper transporter 5 
 ath-r.7   COPT5   copper transporter 5 
 ath-e.2   COPT5   copper transporter 5 
 ath-m.4.bio   COPT5   copper transporter 5 
 ath-m.4.hor   COPT5   copper transporter 5 
 ath-m.4.lig   COPT5   copper transporter 5 
 ath-m.4.str   COPT5   copper transporter 5 
 ath-m.4.tis   COPT5   copper transporter 5 
 ath-u.5   COPT6   Ctr copper transporter family 
 ath-u.5   COPT2   copper transporter 2 
 bra-r.6   103851365   copper transporter 5-like 
 bra-r.6   103845353   copper transporter 1 
 bna-r.1   106425677   copper transporter 5 
 bna-r.1   106420449   copper transporter 3-like 
 bna-r.1   106420268   copper transporter 1-like 
 ghi-r.1   107901056   copper transporter 5 
 ghi-r.1   107929845   copper transporter 5.1 
 cit-r.1   102607848   copper transporter 6-like 
 cit-r.1   102619442   copper transporter 1 
 cit-r.1   102619752   copper transporter 1-like 
 gma-u.5   100805457   copper transporter 5.1 
 gma-u.5   100808693   copper transporter 2 
 vvi-u.5   CTR7   copper transporter 
 vvi-u.5   CTR8   copper transporter 
 vvi-u.5   CTR3   copper transporter 
 ppo-u.5   7468602   copper transporter 1 
 ppo-u.5   18100324   copper transporter 5 
 mtr-u.5   11442243   copper transporter 5.1 
 sly-u.5   101262638   copper transporter 6 
 sly-u.5   101260645   copper transporter 6-like 
 sot-r.1   102606340   copper transporter 6-like 
 sot-r.1   102593875   copper transporter 5 
 nta-r.1   107778500   copper transporter 6-like 
 osa-u.5   4324610   copper transporter 1-like 
 osa-u.5   9269583   copper transporter 6-like 
 osa-u.5   4338846   copper transporter 2-like 
 zma-u.5   103632817   copper transporter 5.1 
 zma-u.5   103646489   copper transporter 6-like 
 tae-r.2   123107058   copper transporter 5.1 
 hvu-r.1   123397297   copper transporter 5.1 
 hvu-r.1   123429833   copper transporter 4-like 
 sbi-r.1   110432205   copper transporter 5.1-like 
 sbi-r.1   8075294   copper transporter 6 
 bdi-r.1   100829673   copper transporter 6 
 cre-r.1   CHLRE_05g247050v5   uncharacterized protein 

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Top 50 coexpressed genes to COPT5 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to COPT5 (ath-m.9 coexpression data)

CoexMap"832188"


athCOPT5 | Entrez gene ID : 832188      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 3 2 3 2 3 2 1 2 2 1 3 2 1 2 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0035434 [list] [network] copper ion transmembrane transport  (7 genes)  IEA  
GO:0051604 [list] [network] protein maturation  (121 genes)  IMP  
GO CC
GO:0005770 [list] [network] late endosome  (43 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO MF
GO:0015089 [list] [network] high-affinity copper ion transmembrane transporter activity  (4 genes)  IGI  
GO:0005375 [list] [network] copper ion transmembrane transporter activity  (15 genes)  ISS  
Protein NP_197565.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 2,  chlo_mito 2,  cysk_nucl 1  (predict for NP_197565.1)
Subcellular
localization
TargetP
scret 5  (predict for NP_197565.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
COPT5
ath-u.5
for
COPT5
ath-r.7
for
COPT5
ath-e.2
for
COPT5
ath-m.4.bio
for
COPT5
ath-m.4.hor
for
COPT5
ath-m.4.lig
for
COPT5
ath-m.4.str
for
COPT5
ath-m.4.tis
for
COPT5
ath-u.5
for
COPT6
ath-u.5
for
COPT2
bra-r.6
for
103851365
bra-r.6
for
103845353
bna-r.1
for
106425677
bna-r.1
for
106420449
bna-r.1
for
106420268
ghi-r.1
for
107901056
ghi-r.1
for
107929845
cit-r.1
for
102607848
cit-r.1
for
102619442
cit-r.1
for
102619752
gma-u.5
for
100805457
gma-u.5
for
100808693
vvi-u.5
for
CTR7
vvi-u.5
for
CTR8
vvi-u.5
for
CTR3
ppo-u.5
for
7468602
ppo-u.5
for
18100324
mtr-u.5
for
11442243
sly-u.5
for
101262638
sly-u.5
for
101260645
sot-r.1
for
102606340
sot-r.1
for
102593875
nta-r.1
for
107778500
osa-u.5
for
4324610
osa-u.5
for
9269583
osa-u.5
for
4338846
zma-u.5
for
103632817
zma-u.5
for
103646489
tae-r.2
for
123107058
hvu-r.1
for
123397297
hvu-r.1
for
123429833
sbi-r.1
for
110432205
sbi-r.1
for
8075294
bdi-r.1
for
100829673
cre-r.1
for
CHLRE_05g247050v5


Ortholog ID: 356
Species ath ath ath bra bra bna bna bna ghi ghi cit cit cit gma gma gma vvi ppo ppo mtr sly sly sly sot sot sot nta nta osa zma zma zma tae hvu sbi sbi bdi bdi cre
Symbol COPT6 COPT2 COPT1 LOC103873286 LOC103856641 LOC106411038 LOC106433299 LOC106443264 LOC107894807 LOC121215527 LOC102619442 LOC102619752 LOC102623246 LOC100805457 LOC100803410 LOC100801036 CTR3 LOC7468602 LOC18100324 LOC11442243 LOC101262638 LOC101260645 LOC101244986 LOC102606340 LOC102593875 LOC102580231 LOC107802213 LOC107830556 LOC4324610 LOC103646489 LOC103643033 LOC100286321 LOC123124804 LOC123397297 LOC8075294 LOC8077126 LOC100831592 LOC100842041 CHLRE_05g247050v5
Function* Ctr copper transporter family copper transporter 2 copper transporter 1 copper transporter 2 copper transporter 1-like copper transporter 5 copper transporter 3-like copper transporter 1 copper transporter 5 copper transporter 6 copper transporter 1 copper transporter 1-like copper transporter 5 copper transporter 5.1 copper transporter 6 copper transporter 5.1 copper transporter copper transporter 1 copper transporter 5 copper transporter 5.1 copper transporter 6 copper transporter 6-like copper transporter 6 copper transporter 6-like copper transporter 5 copper transporter 6-like uncharacterized LOC107802213 copper transporter 6-like copper transporter 1-like copper transporter 6-like copper transporter 5.1 copper transporter 1 copper transporter 5.1 copper transporter 5.1 copper transporter 6 copper transporter 5.1 copper transporter 5.1 copper transporter 3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 7
gma04145 Phagosome 7
gma04142 Lysosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 4
sly00195 Photosynthesis 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 5
sot04145 Phagosome 4
sot04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 4
sot00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00270 Cysteine and methionine metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817239 823843 836020 103873286 103856641 106411038 106433299 106443264 107894807 121215527 102619442 102619752 102623246 100805457 100803410 100801036 100244231 7468602 18100324 11442243 101262638 101260645 101244986 102606340 102593875 102580231 107802213 107830556 4324610 103646489 103643033 100286321 123124804 123397297 8075294 8077126 100831592 100842041 5726486
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