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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TT16   K-box region and MADS-box transcription factor family protein 
 ath-m.4.bio   TT16   K-box region and MADS-box transcription factor family protein 
 ath-m.4.hor   TT16   K-box region and MADS-box transcription factor family protein 
 ath-m.4.lig   TT16   K-box region and MADS-box transcription factor family protein 
 ath-m.4.str   TT16   K-box region and MADS-box transcription factor family protein 
 ath-m.4.tis   TT16   K-box region and MADS-box transcription factor family protein 
 bra-r.6   103854906   protein TRANSPARENT TESTA 16-like 
 bra-r.6   103865402   protein TRANSPARENT TESTA 16 
 bna-r.1   125607076   protein TRANSPARENT TESTA 16-like 
 bna-r.1   106359505   protein TRANSPARENT TESTA 16-like 
 bna-r.1   106444269   protein TRANSPARENT TESTA 16 
 ghi-r.1   121228230   protein TRANSPARENT TESTA 16 
 ghi-r.1   107918783   protein TRANSPARENT TESTA 16-like 
 ghi-r.1   107898867   protein TRANSPARENT TESTA 16-like 
 cit-r.1   102614986   MADS-box protein defh21-like 
 mtr-u.5   11433884   protein TRANSPARENT TESTA 16 
 osa-u.5   4336981   MADS-box transcription factor 31-like 
 tae-r.2   123141355   MADS-box transcription factor 29 
 bdi-r.1   100822441   MADS-box transcription factor 29-like 

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Top 50 coexpressed genes to TT16 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TT16 (ath-m.9 coexpression data)

CoexMap"832390"


athTT16 | Entrez gene ID : 832390      
Species ath bra bna ghi cit mtr osa tae bdi sbi cre ppo sly zma sot gma nta hvu vvi
Paralog 6 2 3 3 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000029 [list] [network] regulation of proanthocyanidin biosynthetic process  (3 genes)  IMP  
GO:0008360 [list] [network] regulation of cell shape  (9 genes)  IMP  
GO:0080155 [list] [network] regulation of double fertilization forming a zygote and endosperm  (11 genes)  IGI  
GO:0080060 [list] [network] integument development  (12 genes)  IGI  
GO:0045595 [list] [network] regulation of cell differentiation  (66 genes)  IMP  
GO:0048481 [list] [network] plant ovule development  (68 genes)  IGI IMP  
GO:0051302 [list] [network] regulation of cell division  (78 genes)  IGI  
GO:0048316 [list] [network] seed development  (775 genes)  IGI IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001119264.1 [sequence] [blastp]
NP_001318626.1 [sequence] [blastp]
NP_001330404.1 [sequence] [blastp]
NP_974823.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  mito 1,  plas 1,  mito_plas 1  (predict for NP_001119264.1)
nucl 6,  cyto 3  (predict for NP_001318626.1)
nucl 6,  cyto 3  (predict for NP_001330404.1)
nucl 9  (predict for NP_974823.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001119264.1)
other 9  (predict for NP_001318626.1)
other 9  (predict for NP_001330404.1)
other 7  (predict for NP_974823.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TT16
ath-m.4.bio
for
TT16
ath-m.4.hor
for
TT16
ath-m.4.lig
for
TT16
ath-m.4.str
for
TT16
ath-m.4.tis
for
TT16
bra-r.6
for
103854906
bra-r.6
for
103865402
bna-r.1
for
125607076
bna-r.1
for
106359505
bna-r.1
for
106444269
ghi-r.1
for
121228230
ghi-r.1
for
107918783
ghi-r.1
for
107898867
cit-r.1
for
102614986
mtr-u.5
for
11433884
osa-u.5
for
4336981
tae-r.2
for
123141355
bdi-r.1
for
100822441


Ortholog ID: 3264
Species bra bra bna bna bna ghi ghi ghi cit mtr osa tae bdi
Symbol LOC103854906 LOC103865402 LOC106366053 LOC106380103 LOC106425709 LOC121228230 LOC107918783 LOC107894052 LOC102614986 LOC11433884 LOC4336981 LOC780650 LOC100822441
Function* protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16 protein TRANSPARENT TESTA 16-like protein TRANSPARENT TESTA 16-like MADS-box protein defh21-like protein TRANSPARENT TESTA 16 MADS-box transcription factor 31-like MADS-box transcription factor 29 MADS-box transcription factor 29-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00053 Ascorbate and aldarate metabolism 2
osa00480 Glutathione metabolism 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103854906 103865402 106366053 106380103 106425709 121228230 107918783 107894052 102614986 11433884 4336981 780650 100822441
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