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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-r.7   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-e.2   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.bio   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.hor   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.lig   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.str   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-m.4.tis   RUP2   Transducin/WD40 repeat-like superfamily protein 
 ath-u.5   RUP1   Transducin/WD40 repeat-like superfamily protein 
 bra-r.6   103865631   WD repeat-containing protein RUP2 
 bra-r.6   103857138   WD repeat-containing protein RUP1 
 bna-r.1   106366040   WD repeat-containing protein RUP2 
 bna-r.1   106428408   WD repeat-containing protein RUP2-like 
 ghi-r.1   107887192   WD repeat-containing protein RUP2 
 ghi-r.1   121226467   WD repeat-containing protein RUP2 
 ghi-r.1   121214677   WD repeat-containing protein RUP2 
 cit-r.1   102607013   WD repeat-containing protein RUP2 
 vvi-u.5   100262691   WD repeat-containing protein RUP2 
 vvi-u.5   100257557   WD repeat-containing protein RUP2 
 ppo-u.5   7484386   WD repeat-containing protein RUP2 
 sly-u.5   101259391   COP1-like protein 
 sot-r.1   102602733   WD repeat-containing protein RUP2-like 
 nta-r.1   107831140   WD repeat-containing protein RUP2 
 nta-r.1   107778287   WD repeat-containing protein RUP2 
 osa-u.5   107279948   WD repeat-containing protein RUP2 
 zma-u.5   100216856   F10K1.23 
 hvu-r.1   123403417   WD repeat-containing protein RUP2-like 
 sbi-r.1   8068219   WD repeat-containing protein RUP2 
 bdi-r.1   100836961   WD repeat-containing protein RUP2 
 cre-r.1   CHLRE_01g053850v5   uncharacterized protein 

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Top 50 coexpressed genes to RUP2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RUP2 (ath-m.9 coexpression data)

CoexMap"832438"


athRUP2 | Entrez gene ID : 832438      
Species ath bra bna ghi cit vvi ppo sly sot nta osa zma hvu sbi bdi cre gma mtr tae
Paralog 10 2 2 3 1 2 1 1 1 2 1 1 1 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04120 [list] [network] Ubiquitin mediated proteolysis (162 genes)
ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0043254 [list] [network] regulation of protein-containing complex assembly  (23 genes)  IDA  
GO:0010224 [list] [network] response to UV-B  (85 genes)  IGI  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_568435.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1  (predict for NP_568435.2)
Subcellular
localization
TargetP
other 6,  mito 3  (predict for NP_568435.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RUP2
ath-u.5
for
RUP2
ath-r.7
for
RUP2
ath-e.2
for
RUP2
ath-m.4.bio
for
RUP2
ath-m.4.hor
for
RUP2
ath-m.4.lig
for
RUP2
ath-m.4.str
for
RUP2
ath-m.4.tis
for
RUP2
ath-u.5
for
RUP1
bra-r.6
for
103865631
bra-r.6
for
103857138
bna-r.1
for
106366040
bna-r.1
for
106428408
ghi-r.1
for
107887192
ghi-r.1
for
121226467
ghi-r.1
for
121214677
cit-r.1
for
102607013
vvi-u.5
for
100262691
vvi-u.5
for
100257557
ppo-u.5
for
7484386
sly-u.5
for
101259391
sot-r.1
for
102602733
nta-r.1
for
107831140
nta-r.1
for
107778287
osa-u.5
for
107279948
zma-u.5
for
100216856
hvu-r.1
for
123403417
sbi-r.1
for
8068219
bdi-r.1
for
100836961
cre-r.1
for
CHLRE_01g053850v5


Ortholog ID: 8162
Species ath ath bra bra bna bna ghi ghi ghi cit vvi vvi ppo sly sot nta nta osa zma hvu sbi bdi cre
Symbol RUP2 RUP1 LOC103865631 LOC103857138 LOC106366040 LOC106428408 LOC107887192 LOC121214677 LOC121206241 LOC102607013 LOC100262691 LOC100257557 LOC7484386 LOC101259391 LOC102602733 LOC107831140 LOC107778287 LOC107279948 LOC100216856 LOC123403417 LOC8068219 LOC100836961 CHLRE_01g053850v5
Function* Transducin/WD40 repeat-like superfamily protein Transducin/WD40 repeat-like superfamily protein WD repeat-containing protein RUP2 WD repeat-containing protein RUP1 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2-like WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 COP1-like protein WD repeat-containing protein RUP2-like WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 F10K1.23 WD repeat-containing protein RUP2-like WD repeat-containing protein RUP2 WD repeat-containing protein RUP2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
ath00900 Terpenoid backbone biosynthesis 3
ath03018 RNA degradation 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00052 Galactose metabolism 2
ath00500 Starch and sucrose metabolism 2
ath04120 Ubiquitin mediated proteolysis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 7
bna00900 Terpenoid backbone biosynthesis 4
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 8
bna00900 Terpenoid backbone biosynthesis 4
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi04712 Circadian rhythm - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
vvi04120 Ubiquitin mediated proteolysis 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 4
sot00940 Phenylpropanoid biosynthesis 2
sot00999 Biosynthesis of various plant secondary metabolites 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 5
sbi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832438 835301 103865631 103857138 106366040 106428408 107887192 121214677 121206241 102607013 100262691 100257557 7484386 101259391 102602733 107831140 107778287 107279948 100216856 123403417 8068219 100836961 5715803
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