ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.9	AT5G38890	Nucleic acid-binding, OB-fold-like protein
ath-u.5	AT5G38890	Nucleic acid-binding, OB-fold-like protein
ath-r.7	AT5G38890	Nucleic acid-binding, OB-fold-like protein
ath-e.2	AT5G38890	Nucleic acid-binding, OB-fold-like protein
ath-m.4.bio	AT5G38890	Nucleic acid-binding, OB-fold-like protein
ath-m.4.hor	AT5G38890	Nucleic acid-binding, OB-fold-like protein
ath-m.4.lig	AT5G38890	Nucleic acid-binding, OB-fold-like protein
ath-m.4.str	AT5G38890	Nucleic acid-binding, OB-fold-like protein
ath-m.4.tis	AT5G38890	Nucleic acid-binding, OB-fold-like protein
bra-r.6	103831079	exosome complex component CSL4
bna-r.1	106426214	exosome complex component CSL4
bna-r.1	111199501	exosome complex component CSL4-like
ghi-r.1	121203562	exosome complex component CSL4
ghi-r.1	107936888	exosome complex component CSL4
cit-r.1	102627664	uncharacterized LOC102627664
gma-u.5	100796154	exosome complex component CSL4-like
ppo-u.5	18104099	uncharacterized LOC18104099
mtr-u.5	25484620	exosome complex component CSL4
sly-u.5	101246918	uncharacterized LOC101246918
sot-r.1	107058202	exosome complex component CSL4
nta-r.1	107807207	uncharacterized LOC107807207
nta-r.1	107796188	uncharacterized LOC107796188
osa-u.5	4331133	exosome complex component csl4
zma-u.5	100281965	uncharacterized LOC100281965
tae-r.2	123125419	exosome complex component CSL4
tae-r.2	123113056	exosome complex component CSL4
tae-r.2	123104767	exosome complex component CSL4
hvu-r.1	123451932	exosome complex component CSL4
sbi-r.1	8056440	exosome complex component CSL4
bdi-r.1	100834661	exosome complex component csl4
cre-r.1	CHLRE_07g312750v5	uncharacterized protein

Annotation

functional annotation

KEGG

ath03018 [list] [network] RNA degradation (114 genes)

GO BP

GO:0006396 [list] [network] RNA processing

(588 genes)

IEA

GO CC

GO:0000178 [list] [network] exosome (RNase complex)	(1 genes)	IEA
GO:0009536 [list] [network] plastid	(5443 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0003723 [list] [network] RNA binding	(1764 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(3104 genes)	IEA

Protein

NP_568559.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 4, nucl 1, cysk 1, cysk_nucl 1

(predict for NP_568559.2)

Subcellular
localization
TargetP

other 8

(predict for NP_568559.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT5G38890	ath-u.5 for AT5G38890	ath-r.7 for AT5G38890	ath-e.2 for AT5G38890	ath-m.4.bio for AT5G38890	ath-m.4.hor for AT5G38890	ath-m.4.lig for AT5G38890	ath-m.4.str for AT5G38890	ath-m.4.tis for AT5G38890	bra-r.6 for 103831079	bna-r.1 for 106426214	bna-r.1 for 111199501	ghi-r.1 for 121203562	ghi-r.1 for 107936888	cit-r.1 for 102627664	gma-u.5 for 100796154	ppo-u.5 for 18104099	mtr-u.5 for 25484620	sly-u.5 for 101246918	sot-r.1 for 107058202	nta-r.1 for 107807207	nta-r.1 for 107796188	osa-u.5 for 4331133	zma-u.5 for 100281965	tae-r.2 for 123125419	tae-r.2 for 123113056	tae-r.2 for 123104767	hvu-r.1 for 123451932	sbi-r.1 for 8056440	bdi-r.1 for 100834661	cre-r.1 for CHLRE_07g312750v5

Ortholog

Ortholog ID: 10971

Species

ath

bra

bna

ghi

cit

gma

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Nucleic acid-binding, OB-fold-like protein